| Protein: | CDC50 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 391 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CDC50.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [1..391] | [1..391] |
|
|
0.0 | [14..371] | [9..367] |
|
|
0.0 | [18..372] | [23..345] |
|
|
0.0 | [11..356] | [15..349] |
|
Region A: Residues: [1-391] |
1 11 21 31 41 51
| | | | | |
1 MVSLFKRGKA PPLTKEGPTS KKPPNTAFRQ QRLKAWQPIL SPQSVLPLLI FVACIFTPIG 60
61 IGLIVSATKV QDLTIDYSHC DTKASTTAFE DIPKKYIKYH FKSKVENKPQ WRLTENENGE 120
121 QSCELQFEIP NDIKKSIFIY YKITNFYQNH RRYVQSFDTK QILGEPIKKD DLDTSCSPIR 180
181 SREDKIIYPC GLIANSMFND TFSQVLSGID DTEDYNLTNK HISWSIDRHR FKTTKYNASD 240
241 IVPPPNWMKK YPDGYTDENL PDIHTWEEFQ VWMRTAAFPK FYKLTLKNES ASLPKGKYQM 300
301 NIELNYPISL FGGTKSFVLT TNGAIGGRNM SLGVLYLIVA GLCALFGIIF LVKLIFQPRA 360
361 MGDHTYLNFD DEENEDYEDV HAENTTLREI L
|
| Detection Method: |  |
| Confidence: | 202.187087 |
| Match: | PF03381 |
| Description: | LEM3 (ligand-effect modulator 3) family / CDC50 family |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [135-391] |
1 11 21 31 41 51
| | | | | |
1 KSIFIYYKIT NFYQNHRRYV QSFDTKQILG EPIKKDDLDT SCSPIRSRED KIIYPCGLIA 60
61 NSMFNDTFSQ VLSGIDDTED YNLTNKHISW SIDRHRFKTT KYNASDIVPP PNWMKKYPDG 120
121 YTDENLPDIH TWEEFQVWMR TAAFPKFYKL TLKNESASLP KGKYQMNIEL NYPISLFGGT 180
181 KSFVLTTNGA IGGRNMSLGV LYLIVAGLCA LFGIIFLVKL IFQPRAMGDH TYLNFDDEEN 240
241 EDYEDVHAEN TTLREIL
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
