YRC Public Data Repository - Protein Structure Prediction

Protein:	YCR090C
Organism:	Saccharomyces cerevisiae
Length:	182 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YCR090C.

Description	E-value	Query Range	Subject Range
YCR090C - Putative protein of unknown function; green fluorescent protein (GFP)-fusion protein localizes to th... gi\|190406506 - gi\|190406506\|gb\|EDV09773.1\| conserved hypothetical protein [Saccharomyces cerevisiae RM11-1a] YCY0_YEAST - UPF0587 protein YCR090C OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YCR090C PE=1 SV=... gi\|207347226 - gi\|207347226\|gb\|EDZ73476.1\| YCR090Cp-like protein [Saccharomyces cerevisiae AWRI1631]	3.0E-65	[1..182]	[1..182]
gi\|123244561, gi... - gi\|21539639\|ref\|NP_083030.1\| hypothetical protein LOC74098 [Mus musculus], gi\|17512533\|gb\|AAH19215.1...	1.0E-55	[3..180]	[40..195]
gi\|55587092 - gi\|55587092\|ref\|XP_513414.1\| PREDICTED: similar to hypothetical protein FLJ20580 [Pan troglodytes] C1orf123 - chromosome 1 open reading frame 123	9.0E-54	[3..180]	[4..159]
gi\|7507776 - gi\|7507776\|pir\|\|T16867 probable cytochrome P450 T13C5.1 [similarity] - Caenorhabditis elegans	1.0E-53	[3..178]	[328..482]
gi\|28394077, gi\|... - gi\|28394077\|gb\|AAO42446.1\| unknown protein [Arabidopsis thaliana], gi\|27754522\|gb\|AAO22708.1\| unknow...	3.0E-48	[6..182]	[5..167]

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Predicted Domain #1

Region A:
Residues: [1-182]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPLFLVLKAT LSENVTKVSI ENTNESRAEF AFDLQCTSCR ELHDSKVIIN TFEEYAMPAS  60
   61 KGTASFLMKC KFCSKELSVN LCAFEDEYLT DQSDDKWAKI KDVRKKHGLS KVKEDSFIPL 120
  121 SLDCRGCELI KFYPDTITFE VSLSSGKVMS CQLEDNEWYD YDDNLGEEVT MTDFSSSIIK 180
  181 GK

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits