YRC Public Data Repository - Protein Structure Prediction

Protein:	CSM1
Organism:	Saccharomyces cerevisiae
Length:	190 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CSM1.

Description	E-value	Query Range	Subject Range
gi\|50286565, gi\|... - gi\|50286565\|ref\|XP_445711.1\| unnamed protein product [Candida glabrata], gi\|49525017\|emb\|CAG58630.1\|... gi\|49525017 - gi\|49525017\|emb\|CAG58630.1\| unnamed protein product [Candida glabrata]	208.0	[0..1]	[182..1]
gi\|49644682\|emb\|... - unnamed protein product [Kluyveromyces lactis NRRL Y-1140] gi\|50311045, gi\|... - gi\|50311045\|ref\|XP_455546.1\| unnamed protein product [Kluyveromyces lactis], gi\|49644682\|emb\|CAG9825...	193.0	[0..1]	[181..1]
gi\|45200862, gi\|... - gi\|45200862\|ref\|NP_986432.1\| AGL235Cp [Ashbya gossypii ATCC 10895], gi\|44985560\|gb\|AAS54256.1\| AGL23... gi\|44985560 - gi\|44985560\|gb\|AAS54256.1\| AGL235Cp [Ashbya gossypii ATCC 10895]	192.0	[0..1]	[189..1]
orf19.7663 - orf19.7663 CGDID:CAL0000945 Assembly 19, Contig19-2518 (201883, 202560) CDS, translated using codon ... gi\|46441238, gi\|... - gi\|68473233\|ref\|XP_719422.1\| hypothetical protein CaO19.7663 [Candida albicans SC5314], gi\|46441238\|...	54.0	[0..7]	[182..42]
gi\|111057804 - gi\|111057804\|gb\|EAT78924.1\| hypothetical protein SNOG_13477 [Phaeosphaeria nodorum SN15]	52.0	[0..10]	[188..314]

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Predicted Domain #1

Region A:
Residues: [1-190]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDPLTVYKNS VKQQIDSADL LVANLVNENF VLSEKLDTKA TEIKQLQKQI DSLNAQVKEL  60
   61 KTQTSQQAEN SEVIKDLYEY LCNVRVHKSY EDDSGLWFDI SQGTHSGGSS DDYSIMDYKL 120
  121 GFVKGQAQVT EVIYAPVLKQ RSTEELYSLQ SKLPEYLFET LSFPLSSLNQ FYNKIAKSLN 180
  181 KKREKKDETE

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.46
Match:	1jchA
Description:	Ribonuclease domain of colicin E3; Colicin E3 translocation domain; Colicin E3 receptor domain
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits