YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: PTC6
Organism: Saccharomyces cerevisiae
Length: 442 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PTC6.

Description E-value Query
Range
Subject
Range
gi|151943891 - gi|151943891|gb|EDN62191.1| protein phosphatase type 2C [Saccharomyces cerevisiae YJM789]
PDP2_YEAST - [Pyruvate dehydrogenase [acetyl-transferring]]-phosphatase 2, mitochondrial OS=Saccharomyces cerevis...
PTC6 - Mitochondrial protein phosphatase of type 2C with similarity to mammalian PP1Ks; involved in mitopha...
8.0E-96 [1..442] [1..442]
PPM1A_BOVIN - Protein phosphatase 1A OS=Bos taurus GN=PPM1A PE=2 SV=1
3.0E-68 [108..438] [22..315]
PPM1A_RAT - Protein phosphatase 1A OS=Rattus norvegicus GN=Ppm1a PE=1 SV=1
1.0E-67 [108..438] [22..315]
P2C21_ARATH - Probable protein phosphatase 2C 21 OS=Arabidopsis thaliana GN=PPC4-2 PE=1 SV=1
2.0E-67 [89..425] [1..343]
PPM1A_RABIT - Protein phosphatase 1A OS=Oryctolagus cuniculus GN=PPM1A PE=2 SV=1
2.0E-67 [108..436] [22..313]
gi|12005898, gi|... - gi|26345004|dbj|BAC36151.1| unnamed protein product [Mus musculus], gi|12005898|gb|AAG44661.1|AF2596...
2.0E-67 [108..441] [22..318]
CCDS9744.1_1 - null
PPM1A - protein phosphatase, Mg2+/Mn2+ dependent, 1A
gi|114653343, gi... - gi|114653347|ref|XP_509986.2| PREDICTED: hypothetical protein LOC452950 isoform 9 [Pan troglodytes],...
gi|109083826, gi... - gi|109083828|ref|XP_001096358.1| PREDICTED: similar to protein phosphatase 1A isoform 1 isoform 5 [M...
gi|123996549, gi... - gi|168279063|dbj|BAG11411.1| protein phosphatase 1A [synthetic construct], gi|123996549|gb|ABM85876....
4.0E-67 [108..436] [22..313]

Back

Predicted Domain #1
Region A:
Residues: [1-93]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRLGNAYAYC KPSQNVGLKL DLLRGLPGYV GHATSRINRL ENQDNYSIKM MRSWPNAYGS  60
   61 ALNCSVFDGH GEKGAQLSQL LADKLCSSLD FPE

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

    MCM
Score
SCOP
Match
SCOP Description
View Download 0.444 a.35.1 lambda repressor-like DNA-binding domains
View Download 0.511 d.51.1 Eukaryotic type KH-domain (KH-domain type I)
View Download 0.449 a.28.3 Retrovirus capsid protein C-terminal domain
View Download 0.494 d.57.1 DNA damage-inducible protein DinI
View Download 0.466 d.56.1 GroEL-intermediate domain like
View Download 0.436 d.58.16 Poly(A) polymerase, C-terminal domain
View Download 0.422 a.3.1 Cytochrome c
View Download 0.422 a.22.1 Histone-fold
View Download 0.400 d.52.3 Prokaryotic type KH domain (KH-domain type II)
View Download 0.380 d.43.1 Elongation factor Ts (EF-Ts), dimerisation domain
View Download 0.375 a.24.4 Hemerythrin
View Download 0.370 a.24.15 FAD-dependent thiol oxidase
View Download 0.367 a.163.1 Crustacean CHH/MIH/GIH neurohormone
View Download 0.357 a.69.3 1-deoxy-D-xylulose-5-phosphate reductoisomerase, C-terminal domain
View Download 0.348 d.74.4 Prokaryotic AspRS, insert domain
View Download 0.341 a.156.1 S13-like H2TH domain
View Download 0.338 d.68.1 Translation initiation factor IF3, C-terminal domain
View Download 0.329 a.133.1 Phospholipase A2, PLA2
View Download 0.322 d.80.1 Tautomerase/MIF
View Download 0.317 a.68.1 Wiscott-Aldrich syndrome protein, WASP, C-terminal domain
View Download 0.315 a.60.5 Barrier-to-autointegration factor, BAF
View Download 0.309 d.39.1 Dynein light chain 8 (DLC8)
View Download 0.303 a.29.4 RecG, N-terminal domain
View Download 0.289 a.40.1 Calponin-homology domain, CH-domain
View Download 0.287 a.8.2 Plasmid maintenance system epsilon/zeta, antidote epsilon subunit
View Download 0.274 a.24.4 Hemerythrin
View Download 0.263 d.95.2 Homing endonucleases
View Download 0.263 a.60.2 RuvA domain 2-like
View Download 0.260 a.24.17 Group V grass pollen allergen
View Download 0.260 d.41.5 Molybdopterin synthase subunit MoaE
View Download 0.259 a.74.1 Cyclin-like
View Download 0.259 a.23.5 Hemolysin expression modulating protein HHA
View Download 0.257 a.39.2 Insect pheromon/odorant-binding proteins
View Download 0.257 a.112.1 Description not found.
View Download 0.254 a.1.1 Globin-like
View Download 0.253 a.4.1 Homeodomain-like
View Download 0.234 a.7.7 BAG domain
View Download 0.233 d.26.1 FKBP-like
View Download 0.224 a.112.1 Description not found.
View Download 0.223 a.60.1 SAM/Pointed domain
View Download 0.222 d.52.2 GMP synthetase C-terminal dimerisation domain
View Download 0.222 a.24.10 Histidine-containing phosphotransfer domain, HPT domain
View Download 0.211 a.133.1 Phospholipase A2, PLA2
View Download 0.204 d.58.20 NAD-binding domain of HMG-CoA reductase
View Download 0.201 a.52.1 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin

Predicted Domain #2
Region A:
Residues: [94-442]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PSWDKQDLKK LVQEYARRFP EGNYWKHKLS TFEKFYNKFI KNCNSKQELL LMKEGDSAIL  60
   61 GQNGGRMIFD KMGNIIDKIA LLTELDRLRL FYGFARFDLD QCCGLGTAAG STASSIFLYP 120
  121 YDDPNAPIDE GKDDDSWIIS HSGLLKLIVT QVGDSKIILC DQDGIAHALT TTHHINSSRE 180
  181 RHRLSIDPSR LDPDAFGETR FLNNFANTRS FGDVAGKPYG ISSEPDIFSF LVGNTLHLPR 240
  241 SERSKLPFNG DECFLALVTD GITNKLADQE VVDLITSTVN SWGLKKATPQ FVAEETIKFI 300
  301 QAIATKHSDN ATCVVVRLSN WGNWPNVDRT GPQRETKLMN AQSNETKLN

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 68.0
Match: 1a6q__
Description: Protein serine/threonine phosphatase 2C, C-terminal domain; Protein serine/threonine phosphatase 2C, catalytic domain
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle