YRC Public Data Repository - Protein Structure Prediction

Protein:	YCR076C
Organism:	Saccharomyces cerevisiae
Length:	250 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YCR076C.

Description	E-value	Query Range	Subject Range
gi\|50294482, gi\|... - gi\|50294482\|ref\|XP_449652.1\| hypothetical protein CAGL0M07007g [Candida glabrata CBS138], gi\|4952896... gi\|49528966 - gi\|49528966\|emb\|CAG62628.1\| unnamed protein product [Candida glabrata]	100.0	[0..97]	[228..152]
gi\|45190875, gi\|... - gi\|45190875\|ref\|NP_985129.1\| AER272Cp [Ashbya gossypii ATCC 10895], gi\|44983917\|gb\|AAS52953.1\| AER27... gi\|44983917 - gi\|44983917\|gb\|AAS52953.1\| AER272Cp [Ashbya gossypii ATCC 10895]	72.0	[0..4]	[227..35]
gi\|49645434 - gi\|49645434\|emb\|CAG99006.1\| KLLA0F27379p [Kluyveromyces lactis] gi\|49645434, gi\|... - gi\|50312525\|ref\|XP_456298.1\| unnamed protein product [Kluyveromyces lactis], gi\|49645434\|emb\|CAG9900...	69.0	[0..119]	[234..173]
gi\|49653896, gi\|... - gi\|50419407\|ref\|XP_458230.1\| hypothetical protein DEHA0C13717g [Debaryomyces hansenii CBS767], gi\|49...	53.0	[0..124]	[248..165]
gi\|56754213 - gi\|56754213\|gb\|AAW25294.1\| SJCHGC05360 protein [Schistosoma japonicum]	52.0	[0..98]	[241..166]

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Predicted Domain #1

Region A:
Residues: [1-89]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIENKVELVA ELVLESIGKT EVVSRHTEGT KSCQVSFRIK DSPSEKGSTS FLSELVVIQT  60
   61 LDDNDKYTVV IRHGTSITMA CVVGYSDFK

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

		MCM Score	SCOP Match	SCOP Description
View	Download	0.817	d.17.2	Copper amine oxidase, domains 1 and 2

Predicted Domain #2

Region A:
Residues: [90-250]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LPTELKWPLE RESLPVEPDL KPIMTQLKRQ TAGSADMPKF DDEYQAQARQ NQGTAPLNPY  60
   61 PGLTVTEPSF ANPAGGYADG DLYPVGTSHP DWSGGLPNPL GNPSSQGGMI FDPNRRPAPR 120
  121 REDMPPGWMP GSKYDEPFGP GSGGFGGSGS GGFGGSGSGF I

[Run NCBI BLAST on this sequence.]

Detection Method:	ab initio
Confidence:	8.01
Match:
Description:	No description for 1deqA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits