| Protein: | SSK22 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 1331 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SSK22.
| Description | E-value | Query Range |
Subject Range |
|
|
1611.0 | [0..24] | [1318..217] |
|
|
1076.0 | [0..62] | [1324..170] |
|
|
1030.0 | [0..34] | [1318..210] |
|
|
921.0 | [0..5] | [1318..98] |
|
|
900.0 | [0..68] | [1330..205] |
|
|
812.0 | [0..359] | [1311..657] |
|
|
802.0 | [0..359] | [1311..590] |
|
|
758.0 | [0..359] | [1311..580] |
|
Region A: Residues: [1-103] |
1 11 21 31 41 51
| | | | | |
1 MMMDILNTQQ QKAAEGGRVL APHTISSKLV KRLSSHSSHK LSRSDLKALG GSETISDGPS 60
61 QLTFKDRYVF NESLYLKKLK KTALDDYYTR GIKLTNRYEE DDG
|
| Detection Method: |  |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.324 | a.158.1 | F-box domain |
| View | Download | 0.324 | a.158.1 | F-box domain |
| View | Download | 0.315 | a.121.1 | Tetracyclin repressor-like, C-terminal domain |
| View | Download | 0.262 | a.24.17 | Group V grass pollen allergen |
| View | Download | 0.262 | a.24.17 | Group V grass pollen allergen |
| View | Download | 0.250 | a.40.1 | Calponin-homology domain, CH-domain |
| View | Download | 0.240 | d.68.6 | DNA-binding protein Sso10b (AlbA) |
| View | Download | 0.236 | a.76.1 | Iron-dependent represor protein, dimerization domain |
|
Region A: Residues: [104-267] |
1 11 21 31 41 51
| | | | | |
1 DDEIIRLSNG DRIDEDLHSG VKFFSTTPYC RKMRSDSDEL AWNEIATERF KWQSMLARVL 60
61 KGDIVKGEKT RIANQVKKPG LNKELSDEIW LELKAWLNGR TMQEMEQSLT YLRDSSDSVF 120
121 EEIMKFQIPQ GKILSLDALE AILQDLMNRY HSVVSYWPNL KKMY
|
| Detection Method: | |
| Confidence: | 11.29 |
| Match: | |
| Description: | No description for 1hciA was found. |
|
Region A: Residues: [268-378] |
1 11 21 31 41 51
| | | | | |
1 KDKPITNTAE FTARIDVMNS WLNFKTNLTL RRQELDDWIN RFSPISSSDN CQEDFDGVPQ 60
61 WNCKMKILAE QLMKEKNIES IFQKKIFYPL SPWMFKLKLH FIVYRETLTK M
|
| Detection Method: | |
| Confidence: | 11.29 |
| Match: | |
| Description: | No description for 1hciA was found. |
|
Region A: Residues: [379-502] |
1 11 21 31 41 51
| | | | | |
1 NIKYPYERLR SLLAFPVYLI KEVILTRLSY ARKLKNPTMM MIDQMIDDFN AFIRLSVQLK 60
61 YTLTKYCSNL PFDVDFDPTF ENTVIEAIRY LFFLLNLKLI DSSKQNFKAP DLLLKYWDHL 120
121 KNTG
|
| Detection Method: | |
| Confidence: | 11.29 |
| Match: | |
| Description: | No description for 1hciA was found. |
|
Region A: Residues: [503-641] |
1 11 21 31 41 51
| | | | | |
1 HYINGAETVI PNEFLKLTLR LVHKLQFYLL KQQNFPPTFA NASEAEKWLS SIFENLGAMK 60
61 RKLNRFSNIL VKAFQNSAVY QINHNAQLVK KLKDAHYFLV YSGNTFESSG VYMFAAPELL 120
121 GCDNDTILRI LRNKSIGCD
|
| Detection Method: | |
| Confidence: | 11.29 |
| Match: | |
| Description: | No description for 1hciA was found. |
|
Region A: Residues: [642-842] |
1 11 21 31 41 51
| | | | | |
1 LVPKLDIGNN LNVYDITTKE TDLNILVSKG EDSKGIPYYR VVANSSSDLD RHAHQSKKKN 60
61 FSTDPFDQHL DEKNNEVFEL EVALSSLGAL VVLYPGEPVV WDGPVYKLPG NNLFASNEMD 120
121 LGKIGNPNTL ILLNQGSNYA LTYQIDKFNQ TVGDSVSFIE KRCSLNSIES SLQKINKAYY 180
181 KLTYTVLNNY KGILGSFMKQ C
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [843-942] |
1 11 21 31 41 51
| | | | | |
1 PGNELLNSIF MFGRDFGRSF LKYNAFSSKR KYVIIFLMVK LGMNWLKFLV EECDPTDQRT 60
61 FRWCVLAMDF AMQMTSGYNI LALNVKQFQE LKERVSVCMS
|
| Detection Method: | |
| Confidence: | 3.522879 |
| Match: | 1f3mA |
| Description: | pak1 autoregulatory domain |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [943-999] |
1 11 21 31 41 51
| | | | | |
1 LLISHFDVMG ARATEAENGM QQARLNIDTE ENIDEEATLE INSRLRLEAI KTLEKTM
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.539 | a.23.7 | Description not found. |
| View | Download | 0.439 | a.4.1 | Homeodomain-like |
| View | Download | 0.439 | a.4.1 | Homeodomain-like |
| View | Download | 0.414 | a.4.1 | Homeodomain-like |
| View | Download | 0.414 | a.4.1 | Homeodomain-like |
| View | Download | 0.413 | a.34.4 | Description not found. |
| View | Download | 0.410 | a.52.1 | Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin |
| View | Download | 0.356 | a.64.1 | Saposin |
| View | Download | 0.345 | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.309 | a.180.1 | N-terminal, cytoplasmic domain of anti-sigmaE factor RseA |
|
Region A: Residues: [1000-1114] |
1 11 21 31 41 51
| | | | | |
1 KRNPRQMGKV LDATDQGNKY LLSLASSLSN VSMRWQKRSF IGGGTFGQVY SAINLENGEI 60
61 LAVKEIKIHD TTTMKKIFPL IKEEMTVLEM LNHPNIVQYY GVEVHRDKVN IFMEY
|
| Detection Method: | |
| Confidence: | 429.218487 |
| Match: | 1f3mC |
| Description: | pak1 |
| Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [1115-1331] |
1 11 21 31 41 51
| | | | | |
1 CEGGSLASLL DHGRIEDEMV TQVYTFELLE GLAYLHQSGV VHRDIKPENI LLDFNGIIKY 60
61 VDFGTARTVV GSRTRTVRNA AVQDFGVETK SLNEMMGTPM YMAPETISGS AVKGKLGADD 120
121 VWALGCVVLE MATGRRPWSN LDNEWAIMYH VAAGRIPQLP NRDEMTAAGR AFLERCLVQD 180
181 PTMRATAVEL LIDPWMIQIR EIAFGNSEKD QVPILSS
|
| Detection Method: | |
| Confidence: | 429.218487 |
| Match: | 1f3mC |
| Description: | pak1 |
| Matching Structure (courtesy of the PDB): |
|
