| Protein: | RAD18 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 487 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RAD18.
| Description | E-value | Query Range |
Subject Range |
|
|
305.0 | [0..4] | [453..6] |
|
|
305.0 | [0..4] | [453..6] |
|
|
257.0 | [0..13] | [335..126] |
|
|
256.0 | [0..13] | [298..64] |
|
|
253.0 | [0..14] | [302..1] |
|
|
249.0 | [0..5] | [429..11] |
|
Region A: Residues: [1-100] |
1 11 21 31 41 51
| | | | | |
1 MDHQITTASD FTTTSIPSLY QLDTLLRCHI CKDFLKVPVL TPCGHTFCSL CIRTHLNNQP 60
61 NCPLCLFEFR ESLLRSEFLV SEIIQSYTSL RSSLLDALRI
|
| Detection Method: |  |
| Confidence: | 55.70927 |
| Match: | 1jm7A |
| Description: | brca1 RING domain |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [101-142] |
1 11 21 31 41 51
| | | | | |
1 PKPTPVPENE EVPGPENSSW IELISESESD SVNAADDDLQ IV
|
| Detection Method: | |
| Confidence: | 2.39794 |
| Match: | 1freA |
| Description: | XNF7 BBOX, DEVELOPMENTAL PROTEIN, PH 7.5, 30 C, WITH ZINC, NMR, 1 STRUCTURE |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [143-266] |
1 11 21 31 41 51
| | | | | |
1 ATSERKLAKR SMTDILPLSS KPSKRNFAMF RSERIKKKSK PNEQMAQCPI CQQFYPLKAL 60
61 EKTHLDECLT LQSLGKKPKI STTFPTESNP HNKSSSRFKV RTPEVDKSSC GETSHVDKYL 120
121 NSMM
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [267-343] |
1 11 21 31 41 51
| | | | | |
1 SAEHQRLPKI NFTSMTQSQI KQKLSSLGLS TNGTRQNMIK RYNHYEMLWN SNFCDSLEPV 60
61 DEAELKRQLL SWDVSHN
|
| Detection Method: | |
| Confidence: | 9.055517 |
| Match: | PF02037 |
| Description: | SAP domain |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [344-487] |
1 11 21 31 41 51
| | | | | |
1 KTPQNSSNKG GISKLMIMKS NGKSSSYRKL LENFKNDKFN RKGWMVMFRK DFARLIREAK 60
61 MKIKTGSSDS SGSVGHSNDG DGVEKVQSDQ GTEDQQMEKD QDTVINEDRV AGERNLPNED 120
121 STDADLSREL MDLNEYSKDP PGNN
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
