| Protein: | ARE1 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 610 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ARE1.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [1..610] | [1..610] |
|
|
0.0 | [158..610] | [85..493] |
|
|
0.0 | [159..610] | [105..512] |
|
|
0.0 | [145..609] | [99..523] |
|
|
0.0 | [145..610] | [97..526] |
|
|
0.0 | [141..609] | [97..548] |
|
|
0.0 | [158..608] | [48..484] |
|
Region A: Residues: [1-131] |
1 11 21 31 41 51
| | | | | |
1 MTETKDLLQD EEFLKIRRLN SAEANKRHSV TYDNVILPQE SMEVSPRSST TSLVEPVEST 60
61 EGVESTEAER VAGKQEQEEE YPVDAHMQKY LSHLKSKSRS RFHRKDASKY VSFFGDVSFD 120
121 PRPTLLDSAI N
|
| Detection Method: |  |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.545 | a.118.8 | TPR-like |
| View | Download | 0.436 | a.100.1 | 6-phosphogluconate dehydrogenase C-terminal domain-like |
| View | Download | 0.460 | a.79.1 | Antitermination factor NusB |
| View | Download | 0.376 | a.69.2 | Ypt/Rab-GAP domain of gyp1p |
| View | Download | 0.545 | a.118.8 | TPR-like |
| View | Download | 0.485 | a.118.8 | TPR-like |
| View | Download | 0.460 | a.79.1 | Antitermination factor NusB |
| View | Download | 0.436 | a.100.1 | 6-phosphogluconate dehydrogenase C-terminal domain-like |
| View | Download | 0.422 | d.92.2 | beta-N-acetylhexosaminidase-like domain |
| View | Download | 0.422 | d.92.2 | beta-N-acetylhexosaminidase-like domain |
| View | Download | 0.356 | a.4.1 | Homeodomain-like |
| View | Download | 0.340 | a.45.1 | Glutathione S-transferase (GST), C-terminal domain |
| View | Download | 0.330 | a.80.1 | DNA polymerase III clamp loader subunits, C-terminal domain |
| View | Download | 0.314 | a.24.10 | Histidine-containing phosphotransfer domain, HPT domain |
| View | Download | 0.248 | a.152.1 | Antioxidant defence protein AhpD |
| View | Download | 0.241 | c.45.1 | (Phosphotyrosine protein) phosphatases II |
| View | Download | 0.223 | a.29.3 | Acyl-CoA dehydrogenase C-terminal domain-like |
| View | Download | 0.223 | d.26.1 | FKBP-like |
|
Region A: Residues: [132-315] |
1 11 21 31 41 51
| | | | | |
1 VPFQTTFKGP VLEKQLKNLQ LTKTKTKATV KTTVKTTEKT DKADAPPGEK LESNFSGIYV 60
61 FAWMFLGWIA IRCCTDYYAS YGSAWNKLEI VQYMTTDLFT IAMLDLAMFL CTFFVVFVHW 120
121 LVKKRIINWK WTGFVAVSIF ELAFIPVTFP IYVYYFDFNW VTRIFLFLHS VVFVMKSHSF 180
181 AFYN
|
| Detection Method: | |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [316-367] |
1 11 21 31 41 51
| | | | | |
1 GYLWDIKQEL EYSSKQLQKY KESLSPETRE ILQKSCDFCL FELNYQTKDN DF
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.397 | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.455 | a.65.1 | Annexin |
| View | Download | 0.764 | a.144.1 | PABC (PABP) domain |
| View | Download | 0.404 | a.46.2 | Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain |
| View | Download | 0.780 | a.144.2 | Ribosomal protein L20 |
| View | Download | 0.356 | a.60.2 | RuvA domain 2-like |
| View | Download | 0.318 | a.37.1 | A DNA-binding domain in eukaryotic transcription factors |
| View | Download | 0.313 | a.157.1 | Skp1 dimerisation domain-like |
| View | Download | 0.288 | a.4.1 | Homeodomain-like |
| View | Download | 0.280 | a.4.1 | Homeodomain-like |
| View | Download | 0.279 | g.58.1 | Pheromone ER-23 |
| View | Download | 0.275 | a.108.1 | Ribosomal protein L7/12, oligomerisation (N-terminal) domain |
| View | Download | 0.273 | a.6.1 | Putative DNA-binding domain |
| View | Download | 0.230 | a.5.2 | UBA-like |
| View | Download | 0.224 | a.5.1 | DNA helicase RuvA subunit, C-terminal domain |
| View | Download | 0.212 | a.52.1 | Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin |
| View | Download | 0.210 | a.4.1 | Homeodomain-like |
| View | Download | 0.203 | a.144.1 | PABC (PABP) domain |
|
Region A: Residues: [368-610] |
1 11 21 31 41 51
| | | | | |
1 PNNISCSNFF MFCLFPVLVY QINYPRTSRI RWRYVLEKVC AIIGTIFLMM VTAQFFMHPV 60
61 AMRCIQFHNT PTFGGWIPAT QEWFHLLFDM IPGFTVLYML TFYMIWDALL NCVAELTRFA 120
121 DRYFYGDWWN CVSFEEFSRI WNVPVHKFLL RHVYHSSMGA LHLSKSQATL FTFFLSAVFH 180
181 EMAMFAIFRR VRGYLFMFQL SQFVWTALSN TKFLRARPQL SNVVFSFGVC SGPSIIMTLY 240
241 LTL
|
| Detection Method: | |
| Confidence: | 129.200659 |
| Match: | PF01800 |
| Description: | No description for PF01800 was found. |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [499-610] |
1 11 21 31 41 51
| | | | | |
1 VSFEEFSRIW NVPVHKFLLR HVYHSSMGAL HLSKSQATLF TFFLSAVFHE MAMFAIFRRV 60
61 RGYLFMFQLS QFVWTALSNT KFLRARPQLS NVVFSFGVCS GPSIIMTLYL TL
|
| Detection Method: | |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
