YRC Public Data Repository - Protein Structure Prediction

Protein:	IMG1
Organism:	Saccharomyces cerevisiae
Length:	169 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for IMG1.

Description	E-value	Query Range	Subject Range
IMG1_YEAST - 54S ribosomal protein IMG1, mitochondrial OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) G... gi\|151943866 - gi\|151943866\|gb\|EDN62166.1\| mitochondrial ribosomal large subunit component [Saccharomyces cerevisia... gi\|190406475 - gi\|190406475\|gb\|EDV09742.1\| mitochondrial ribosomal protein [Saccharomyces cerevisiae RM11-1a] IMG1 - Mitochondrial ribosomal protein of the large subunit, required for respiration and for maintenance o...	4.0E-45	[1..169]	[1..169]
IMG1_SCHPO - 54S ribosomal protein subunit img1, mitochondrial OS=Schizosaccharomyces pombe (strain 972 / ATCC 24... img1 - mitochondrial ribosomal protein subunit L19	8.0E-32	[7..167]	[20..173]
RL19_AGRFC - 50S ribosomal protein L19 OS=Agrobacterium fabrum (strain C58 / ATCC 33970) GN=rplS PE=3 SV=1 gi\|25295335, gi\|... - gi\|25295337\|pir\|\|F97683 50S ribosomal protein L19 [imported] - Agrobacterium tumefaciens (strain C58...	7.0E-31	[47..169]	[3..125]
RL19_CAUCR - 50S ribosomal protein L19 OS=Caulobacter crescentus GN=rplS PE=3 SV=1 RL19_CAUCR - 50S ribosomal protein L19 OS=Caulobacter crescentus (strain ATCC 19089 / CB15) GN=rplS PE=3 SV=1	1.0E-30	[44..163]	[1..118]
RL19_RHIME - 50S ribosomal protein L19 OS=Rhizobium meliloti (strain 1021) GN=rplS PE=3 SV=1 RL19_RHIME - 50S ribosomal protein L19 OS=Rhizobium meliloti GN=rplS PE=3 SV=1	1.0E-30	[46..169]	[1..124]
RL19_GEOSE - 50S ribosomal protein L19 OS=Geobacillus stearothermophilus GN=rplS PE=3 SV=1	2.0E-30	[57..167]	[7..116]
RL19_VIBCM - 50S ribosomal protein L19 OS=Vibrio cholerae serotype O1 (strain M66-2) GN=rplS PE=3 SV=1 gi\|75814057, gi\|... - gi\|75814057\|ref\|ZP_00744708.1\| COG0335: Ribosomal protein L19 [Vibrio cholerae V52], gi\|121730267\|re... gi\|229355920, gi... - gi\|229507175\|ref\|ZP_04396681.1\| LSU ribosomal protein L19p [Vibrio cholerae BX 330286], gi\|229355920... gi\|229509160, gi... - gi\|229509160\|ref\|ZP_04398645.1\| LSU ribosomal protein L19p [Vibrio cholerae B33], gi\|229353732\|gb\|EE... gi\|229512833, gi... - gi\|229512833\|ref\|ZP_04402300.1\| LSU ribosomal protein L19p [Vibrio cholerae TMA 21], gi\|229350082\|gb... gi\|229519630, gi... - gi\|229519630\|ref\|ZP_04409073.1\| LSU ribosomal protein L19p [Vibrio cholerae RC9], gi\|229344319\|gb\|EE... gi\|229520860, gi... - gi\|229520860\|ref\|ZP_04410282.1\| LSU ribosomal protein L19p [Vibrio cholerae TM 11079-80], gi\|2293420... gi\|197750586, gi... - gi\|254292063\|ref\|ZP_04962839.1\| ribosomal protein L19 [Vibrio cholerae AM-19226], gi\|197750586\|ref\|Y... gi\|229338805, gi... - gi\|229525224\|ref\|ZP_04414629.1\| LSU ribosomal protein L19p [Vibrio cholerae bv. albensis VL426], gi\|... gi\|148874301, gi... - gi\|153830241\|ref\|ZP_01982908.1\| ribosomal protein L19 [Vibrio cholerae 623-39], gi\|148874301\|gb\|EDL7... gi\|229530377, gi... - gi\|229530377\|ref\|ZP_04419765.1\| LSU ribosomal protein L19p [Vibrio cholerae 12129(1)], gi\|229332150\|... gi\|229368802, gi... - gi\|229606147\|ref\|YP_002876795.1\| LSU ribosomal protein L19p [Vibrio cholerae MJ-1236], gi\|229368802\|... RL19_VIBCH - 50S ribosomal protein L19 OS=Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961) G... RL19_VIBCH - 50S ribosomal protein L19 OS=Vibrio cholerae GN=rplS PE=3 SV=3 gi\|153216310, gi... - gi\|153216310\|ref\|ZP_01950400.1\| ribosomal protein L19 [Vibrio cholerae 1587], gi\|124114352\|gb\|EAY331... gi\|124117868, gi... - gi\|153224048\|ref\|ZP_01954193.1\| ribosomal protein L19 [Vibrio cholerae MAK 757], gi\|124117868\|gb\|EAY... gi\|124120841, gi... - gi\|153803623\|ref\|ZP_01958209.1\| ribosomal protein L19 [Vibrio cholerae MZO-3], gi\|124120841\|gb\|EAY39... gi\|153820582, gi... - gi\|153820582\|ref\|ZP_01973249.1\| ribosomal protein L19 [Vibrio cholerae NCTC 8457], gi\|126508874\|gb\|E... gi\|153827343, gi... - gi\|153827343\|ref\|ZP_01980010.1\| ribosomal protein L19 [Vibrio cholerae MZO-2], gi\|149738738\|gb\|EDM53... RL19_VIBC3 - 50S ribosomal protein L19 OS=Vibrio cholerae serotype O1 (strain ATCC 39541 / Classical Ogawa 395 / ... gi\|75828608, gi\|... - gi\|75828608\|ref\|ZP_00757979.1\| COG0335: Ribosomal protein L19 [Vibrio cholerae MO10], gi\|254850801\|r...	3.0E-30	[49..168]	[1..117]
RL19_BRUSI - 50S ribosomal protein L19 OS=Brucella suis (strain ATCC 23445 / NCTC 10510) GN=rplS PE=3 SV=1 RL19_BRUC2 - 50S ribosomal protein L19 OS=Brucella canis (strain ATCC 23365 / NCTC 10854) GN=rplS PE=3 SV=1 RL19_BRUMB - 50S ribosomal protein L19 OS=Brucella melitensis biotype 2 (strain ATCC 23457) GN=rplS PE=3 SV=1 gi\|225616932, gi... - gi\|225628107\|ref\|ZP_03786142.1\| ribosomal protein L19 [Brucella ceti str. Cudo], gi\|225616932\|gb\|EEH... gi\|254690052 - gi\|254690052\|ref\|ZP_05153306.1\| 50S ribosomal protein L19 [Brucella abortus bv. 6 str. 870] gi\|237816270, gi... - gi\|237816270\|ref\|ZP_04595263.1\| ribosomal protein L19 [Brucella abortus str. 2308 A], gi\|237788337\|g... gi\|254696165 - gi\|254696165\|ref\|ZP_05157993.1\| 50S ribosomal protein L19 [Brucella abortus bv. 2 str. 86/8/59] RL19_BRUME - 50S ribosomal protein L19 OS=Brucella melitensis GN=rplS PE=3 SV=1 gi\|254694540 - gi\|254694540\|ref\|ZP_05156368.1\| 50S ribosomal protein L19 [Brucella abortus bv. 3 str. Tulya] RL19_BRUSU - 50S ribosomal protein L19 OS=Brucella suis GN=rplS PE=3 SV=1 gi\|254704921 - gi\|254704921\|ref\|ZP_05166749.1\| 50S ribosomal protein L19 [Brucella suis bv. 3 str. 686] gi\|254700551 - gi\|254700551\|ref\|ZP_05162379.1\| 50S ribosomal protein L19 [Brucella suis bv. 5 str. 513] gi\|254708898 - gi\|254708898\|ref\|ZP_05170709.1\| 50S ribosomal protein L19 [Brucella pinnipedialis B2/94] gi\|254707565 - gi\|254707565\|ref\|ZP_05169393.1\| 50S ribosomal protein L19 [Brucella pinnipedialis M163/99/10] gi\|254715972 - gi\|254715972\|ref\|ZP_05177783.1\| 50S ribosomal protein L19 [Brucella ceti M13/05/1] RL19_BRUO2 - 50S ribosomal protein L19 OS=Brucella ovis (strain ATCC 25840 / 63/290 / NCTC 10512) GN=rplS PE=3 SV... gi\|254713677 - gi\|254713677\|ref\|ZP_05175488.1\| 50S ribosomal protein L19 [Brucella ceti M644/93/1] RL19_BRUA1 - 50S ribosomal protein L19 OS=Brucella abortus (strain S19) GN=rplS PE=3 SV=1 gi\|254731083 - gi\|254731083\|ref\|ZP_05189661.1\| 50S ribosomal protein L19 [Brucella abortus bv. 4 str. 292] RL19_BRUA2 - 50S ribosomal protein L19 OS=Brucella abortus (strain 2308) GN=rplS PE=3 SV=1 RL19_BRUAB - 50S ribosomal protein L19 OS=Brucella abortus biovar 1 (strain 9-941) GN=rplS PE=3 SV=1 RL19_BRUAB - 50S ribosomal protein L19 OS=Brucella abortus GN=rplS PE=3 SV=1 RL19_BRUSU - 50S ribosomal protein L19 OS=Brucella suis biovar 1 (strain 1330) GN=rplS PE=3 SV=1 RL19_BRUME - 50S ribosomal protein L19 OS=Brucella melitensis biotype 1 (strain 16M / ATCC 23456 / NCTC 10094) GN...	1.0E-29	[54..164]	[9..118]
gi\|7440929 - gi\|7440929\|pir\|\|E69696 ribosomal protein L19 rplS - Bacillus subtilis gi\|16078667, gi\|... - gi\|2633976\|emb\|CAB13477.1\| ribosomal protein L19 [Bacillus subtilis subsp. subtilis str. 168], gi\|16...	2.0E-29	[41..166]	[1..118]
RL19_BACSU - 50S ribosomal protein L19 OS=Bacillus subtilis GN=rplS PE=3 SV=2 gi\|221322999 - gi\|221322999\|ref\|ZP_03604293.1\| 50S ribosomal protein L19 [Bacillus subtilis subsp. subtilis str. SM... gi\|221318728 - gi\|221318728\|ref\|ZP_03600022.1\| 50S ribosomal protein L19 [Bacillus subtilis subsp. subtilis str. JH... gi\|221313804 - gi\|221313804\|ref\|ZP_03595609.1\| 50S ribosomal protein L19 [Bacillus subtilis subsp. subtilis str. NC... RL19_BACSU - 50S ribosomal protein L19 OS=Bacillus subtilis (strain 168) GN=rplS PE=1 SV=2	4.0E-29	[49..166]	[1..115]

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Predicted Domain #1

Region A:
Residues: [1-169]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MWSRNVRLLG SWTRSYMVPA TKRKTIPVYP PVQRIASSQI MKQVALSEIE SLDPGAVKRK  60
   61 LISKKNKDRL KAGDVVRIVY DSSKCSYDTF VGYILSIDRK QLVQDASLLL RNQIAKTAVE 120
  121 IRVPLFSPLI ERIDLLTPHV SSRQRNKHYY IRGTRLDVGD LEAGLRRKK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	27.221849
Match:	1lnrN_
Description:	No description for 1lnrN_ was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits