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View Structure Prediction Details

Protein: YCR043C
Organism: Saccharomyces cerevisiae
Length: 127 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YCR043C.

Description E-value Query
Range
Subject
Range
gi|49641425, gi|... - gi|50304673|ref|XP_452292.1| unnamed protein product [Kluyveromyces lactis], gi|49641425|emb|CAH0114...
gi|49641425 - gi|49641425|emb|CAH01143.1| KLLA0C02145p [Kluyveromyces lactis]
99.0 [0..1] [79..1]
gi|44985335 - gi|44985335|gb|AAS54048.1| AFR676Cp [Ashbya gossypii ATCC 10895]
gi|44985335, gi|... - gi|45199195|ref|NP_986224.1| AFR676Cp [Ashbya gossypii ATCC 10895], gi|44985335|gb|AAS54048.1| AFR67...
90.0 [0..2] [91..3]

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Predicted Domain #1
Region A:
Residues: [1-127]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIPAPLDASL LREHAFQGTN DLSTVLSPST FTDEGGYKPV LKYGLGYFNY GLVIDDEVYD  60
   61 YSVCDIIRGH VYDHFWCYFC CFMILFTIWL ISLNWCPSSK KSKFDWSKKK DDFKMEGGDL 120
  121 EYQHVKI

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

    MCM
Score
SCOP
Match
SCOP Description
View Download 0.332 a.118.8 TPR-like
View Download 0.317 a.29.5 alpha-ketoacid dehydrogenase kinase, N-terminal domain
View Download 0.299 a.29.16 Description not found.
View Download 0.282 a.39.1 EF-hand
View Download 0.272 a.29.3 Acyl-CoA dehydrogenase C-terminal domain-like
View Download 0.262 a.133.1 Phospholipase A2, PLA2
View Download 0.262 a.133.1 Phospholipase A2, PLA2
View Download 0.258 a.62.1 Hepatitis B viral capsid (hbcag)


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle