YRC Public Data Repository - Protein Structure Prediction

Protein:	YCR023C
Organism:	Saccharomyces cerevisiae
Length:	611 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YCR023C.

Description	E-value	Query Range	Subject Range
YCR023C - Vacuolar membrane protein of unknown function; member of the multidrug resistance family; YCR023C is... YCR3_YEAST - Uncharacterized membrane protein YCR023C OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN...	0.0	[1..611]	[1..611]
gi\|21225257, gi\|... - gi\|7649556\|emb\|CAB89031.1\| putative membrane transport protein. [Streptomyces coelicolor A3(2)], gi\|...	5.0E-54	[13..246]	[28..265]
gi\|15595443, gi\|... - gi\|9946085\|gb\|AAG03635.1\|AE004462_8 probable major facilitator superfamily (MFS) transporter [Pseudo... gi\|11351456 - pir\|\|H83615 probable MFS transporter PA0246 [imported] - Pseudomonas aeruginosa (strain PAO1) gi\|218888987, gi... - gi\|218888987\|ref\|YP_002437851.1\| putative major facilitator superfamily (MFS) transporter [Pseudomon...	3.0E-52	[6..226]	[1..227]
gi\|62390129, gi\|... - gi\|62390129\|ref\|YP_225531.1\| major facilitator superfamily permease [Corynebacterium glutamicum ATCC...	8.0E-52	[2..252]	[19..271]
YUSP_BACSU - Uncharacterized MFS-type transporter yusP OS=Bacillus subtilis GN=yusP PE=3 SV=1 gi\|221315563 - gi\|221315563\|ref\|ZP_03597368.1\| hypothetical protein BsubsN3_17762 [Bacillus subtilis subsp. subtili... YUSP_BACSU - Uncharacterized MFS-type transporter YusP OS=Bacillus subtilis (strain 168) GN=yusP PE=3 SV=1 gi\|221320478 - gi\|221320478\|ref\|ZP_03601772.1\| hypothetical protein BsubsJ_17725 [Bacillus subtilis subsp. subtilis... gi\|221324762 - gi\|221324762\|ref\|ZP_03606056.1\| hypothetical protein BsubsS_17876 [Bacillus subtilis subsp. subtilis...	2.0E-51	[9..248]	[5..248]
gi\|14027563, gi\|... - gi\|14027563\|dbj\|BAB53832.1\| efflux pump protein; FarB [Mesorhizobium loti MAFF303099], gi\|13476802\|r...	3.0E-51	[6..220]	[1..217]
gi\|7507776 - gi\|7507776\|pir\|\|T16867 probable cytochrome P450 T13C5.1 [similarity] - Caenorhabditis elegans	7.0E-51	[2..251]	[7..261]
gi\|16800049 - gi\|16800049\|ref\|NP_470317.1\| hypothetical protein lin0980 [Listeria innocua Clip11262] gi\|25299387, gi\|... - pir\|\|AC1555 efflux transporter homolog lin0980 [imported] - Listeria innocua (strain Clip11262), gi\|...	5.0E-50	[15..247]	[5..238]
gi\|16803021 - gi\|16803021\|ref\|NP_464506.1\| hypothetical protein lmo0981 [Listeria monocytogenes EGD-e] gi\|25299388, gi\|... - pir\|\|AE1197 efflux transporter homolog lmo0981 [imported] - Listeria monocytogenes (strain EGD-e), g... gi\|153173930, gi... - gi\|254827927\|ref\|ZP_05232614.1\| hypothetical protein LmonocytogeFSL_05645 [Listeria monocytogenes FS... gi\|254832273, gi... - gi\|254832273\|ref\|ZP_05236928.1\| hypothetical protein Lmon1_13044 [Listeria monocytogenes 10403S], gi... gi\|224502703 - gi\|224502703\|ref\|ZP_03671010.1\| hypothetical protein LmonFR_09309 [Listeria monocytogenes FSL R2-561... gi\|224500647 - gi\|224500647\|ref\|ZP_03668996.1\| hypothetical protein LmonF1_13631 [Listeria monocytogenes Finland 19...	6.0E-50	[15..246]	[5..237]

Back

Predicted Domain #1

Region A:
Residues: [1-271]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MARQKLTFKE QMDGFPWVQL VVVSLVRFSE PIAFSSLFPY VYFMVRDFNI APNDAQVSKY  60
   61 SGYLSSSFAL CQVISAYHWG RFSEKHGRKI TLTCGLIGTS VSLLILGFSR NFYQALVARS 120
  121 LMGLLNGNVG VIRTIIGEIA TERKHQALAF STMPLLFQFG AVVGPMIGGF LVFRDGTMNE 180
  181 VPLWFPHFAK RIIRSYPYAL PNVVVCMFLM FGLTNATLFL EETHPAFKDR RDYGLEVGDF 240
  241 IKKNIFGIQP KRRPWQKRIQ DDSENIHHRN E

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	8.69897
Match:	1lviA_
Description:	No description for 1lviA_ was found.

Predicted Domain #2

Region A:
Residues: [272-611]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NVNSIRGQDS EEDENSPLVN TTNDDDTESI QSIDPILTRR QSVGLIRTYS LHEPTDAVHA  60
   61 NIDTAPDGCK ESSIFHHVFH TKVFYPISVN FIMALHLIVY NEFLPVFLAY DLAVDPENPK 120
  121 KLASKFPWKI SGGIGYEPEQ TGTLLSTTGI FGCFVVIFIF PIVDRNFDCL TIFRTLVKLY 180
  181 PIMYVMVPYV VFLQNERIPS WYTVVYLYII TGIKTFCGAL TSPQIMLLIH NSSPLSCRSV 240
  241 INGATISISA SARFIGPLVW GYIMSWSQQN DVAWVSWWSL SLFCMVALYQ SYKIAPIDDN 300
  301 ENELHGQGSE DAYNSQSQSS DLRMAHRSSL SSLSNQRCTT

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [323-611]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 HEPTDAVHAN IDTAPDGCKE SSIFHHVFHT KVFYPISVNF IMALHLIVYN EFLPVFLAYD  60
   61 LAVDPENPKK LASKFPWKIS GGIGYEPEQT GTLLSTTGIF GCFVVIFIFP IVDRNFDCLT 120
  121 IFRTLVKLYP IMYVMVPYVV FLQNERIPSW YTVVYLYIIT GIKTFCGALT SPQIMLLIHN 180
  181 SSPLSCRSVI NGATISISAS ARFIGPLVWG YIMSWSQQND VAWVSWWSLS LFCMVALYQS 240
  241 YKIAPIDDNE NELHGQGSED AYNSQSQSSD LRMAHRSSLS SLSNQRCTT

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	3.11
Match:	2v8nA
Description:	No description for 2v8nA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits