YRC Public Data Repository - Protein Structure Prediction

Protein:	HSP30
Organism:	Saccharomyces cerevisiae
Length:	332 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for HSP30.

Description	E-value	Query Range	Subject Range
gi\|7507776 - gi\|7507776\|pir\|\|T16867 probable cytochrome P450 T13C5.1 [similarity] - Caenorhabditis elegans	0.0	[1..332]	[1..332]
HSP30 - Hydrophobic plasma membrane localized, stress-responsive protein that negatively regulates the H(+)-... gi\|151943842 - gi\|151943842\|gb\|EDN62142.1\| heat shock protein [Saccharomyces cerevisiae YJM789] gi\|190406457 - gi\|190406457\|gb\|EDV09724.1\| 30 kDa heat shock protein [Saccharomyces cerevisiae RM11-1a] HSP30_YEAST - 30 kDa heat shock protein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=HSP30 PE=1 SV=...	0.0	[1..332]	[1..332]
F123_CORVE - (O74631) Protein FDD123 (CvHSP30/1) FD123_TRAVE - Protein FDD123 OS=Trametes versicolor GN=FDD123 PE=2 SV=1	6.0E-49	[12..312]	[3..275]
gi\|16797781 - gi\|16797781\|gb\|AAL27088.1\| opsin 1 [Coccidioides posadasii]	1.0E-48	[19..292]	[19..278]
NOP1_NEUCR - Opsin-1 OS=Neurospora crassa GN=nop-1 PE=1 SV=1 NOP1_NEUCR - Opsin-1 OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=...	1.0E-47	[18..292]	[32..295]

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Predicted Domain #1

Region A:
Residues: [1-332]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNDTLSSFLN RNEALGLNPP HGLDMHITKR GSDWLWAVFA VFGFILLCYV VMFFIAENKG  60
   61 SRLTRYALAP AFLITFFEFF AFFTYASDLG WTGVQAEFNH VKVSKSITGE VPGIRQIFYS 120
  121 KYIAWFLSWP CLLFLIELAA STTGENDDIS ALDMVHSLLI QIVGTLFWVV SLLVGSLIKS 180
  181 TYKWGYYTIG AVAMLVTQGV ICQRQFFNLK TRGFNALMLC TCMVIVWLYF ICWGLSDGGN 240
  241 RIQPDGEAIF YGVLDLCVFA IYPCYLLIAV SRDGKLPRLS LTGGFSHHHA TDDVEDAAPE 300
  301 TKEAVPESPR ASGETAIHEP EPEAEQAVED TA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	44.0
Match:	1c8rA_
Description:	Bacteriorhodopsin
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits