YRC Public Data Repository - Protein Structure Prediction

Protein:	MAK31
Organism:	Saccharomyces cerevisiae
Length:	88 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for MAK31.

Description	E-value	Query Range	Subject Range
gi\|50293421, gi\|... - gi\|50293421\|ref\|XP_449122.1\| unnamed protein product [Candida glabrata], gi\|49528435\|emb\|CAG62092.1\|... gi\|49528435 - gi\|49528435\|emb\|CAG62092.1\| unnamed protein product [Candida glabrata]	83.0	[0..2]	[88..5]
gi\|45190560, gi\|... - gi\|45190560\|ref\|NP_984814.1\| AEL047Cp [Ashbya gossypii ATCC 10895], gi\|44983502\|gb\|AAS52638.1\| AEL04... gi\|44983502 - gi\|44983502\|gb\|AAS52638.1\| AEL047Cp [Ashbya gossypii ATCC 10895]	64.0	[0..4]	[80..28]
gi\|49640619 - gi\|49640619\|emb\|CAH03076.1\| KLLA0A11220p [Kluyveromyces lactis] gi\|50303101, gi\|... - gi\|50303101\|ref\|XP_451488.1\| unnamed protein product [Kluyveromyces lactis], gi\|49640619\|emb\|CAH0307...	54.0	[0..4]	[88..7]
gi\|157118205, gi... - gi\|157118205\|ref\|XP_001659059.1\| small nuclear ribonucleoprotein, core, putative [Aedes aegypti], gi...	47.0	[0..6]	[70..47]

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Predicted Domain #1

Region A:
Residues: [1-88]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDILKLSDFI GNTLIVSLTE DRILVGSLVA VDAQMNLLLD HVEERMGSSS RMMGLVSVPR  60
   61 RSVKTIMIDK PVLQELTANK VELMANIV

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	3.42
Match:	1b34A
Description:	D1 core SNRNP protein
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits