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View Structure Prediction Details

Protein: RVS161
Organism: Saccharomyces cerevisiae
Length: 265 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RVS161.

Description E-value Query
Range		 Subject
Range
RVS161 - Amphiphysin-like lipid raft protein; interacts with Rvs167p and regulates polarization of the actin ...
RV161_YEAST - Reduced viability upon starvation protein 161 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288...
ORFP:2446 - YCR009C, Contig c87 3568-4365 reverse complement
gi|151943829 - gi|151943829|gb|EDN62129.1| amphiphysin-like lipid raft protein [Saccharomyces cerevisiae YJM789]
 2.0E-50 [1..265] [1..265]
HOB3_SCHPO - Protein hob3 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=hob3 PE=1 SV=1
hob3 - BAR adaptor protein Hob3
 3.0E-49 [1..262] [1..260]
gi|7507776 - gi|7507776|pir||T16867 probable cytochrome P450 T13C5.1 [similarity] - Caenorhabditis elegans
 6.0E-49 [1..262] [7..266]
AMPH_RAT - Amphiphysin OS=Rattus norvegicus GN=Amph PE=1 SV=1
 9.0E-48 [3..236] [10..237]
AMPH - amphiphysin
 2.0E-46 [3..236] [10..237]
gi|18376206 - gi|18376206|emb|CAD21322.1| probable cytosceletal binding protein [Neurospora crassa]
 8.0E-44 [1..261] [1..271]
AMPH_CHICK - Amphiphysin OS=Gallus gallus GN=AMPH PE=2 SV=1
 9.0E-44 [3..236] [10..237]

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Predicted Domain #1
Region A:
Residues: [1-265] 
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSWEGFKKAI NRAGHSVIIK NVDKTIDKEY DMEERRYKVL QRAGEALQKE AKGFLDSLRA  60
   61 VTASQTTIAE VISNLYDDSK YVAGGGYNVG NYYLQCVQDF DSETVKQLDG PLRETVLDPI 120
  121 TKFSTYFKEI EEAIKKRDHK KQDFDAAKAK VRRLVDKPAK DASKLPRAEK ELSLAKDIFE 180
  181 NLNNQLKTEL PQLVSLRVPY FDPSFEALIK IQLRFCTDGY TRLAQIQQYL DQQSRDDYAN 240
  241 GLLDTKIEEL LGQMTSLDIC ALGIK

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 8.69897
Match: 1i49A_
Description: Arfaptin, Rac-binding fragment
Matching Structure (courtesy of the PDB):
YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle