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View Structure Prediction Details

Protein: MRC1
Organism: Saccharomyces cerevisiae
Length: 1096 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for MRC1.

Description E-value Query
Range
Subject
Range
gi|50285111, gi|... - gi|50285111|ref|XP_444984.1| unnamed protein product [Candida glabrata], gi|49524287|emb|CAG57884.1|...
gi|49524287 - gi|49524287|emb|CAG57884.1| unnamed protein product [Candida glabrata]
332.0 [0..177] [1095..289]
gi|45199265, gi|... - gi|45199265|ref|NP_986294.1| AFR745Wp [Ashbya gossypii ATCC 10895], gi|44985405|gb|AAS54118.1| AFR74...
gi|44985405 - gi|44985405|gb|AAS54118.1| AFR745Wp [Ashbya gossypii ATCC 10895]
300.0 [0..13] [1095..10]
gi|4772 - gi|4772|emb|CAA37945.1| unnamed protein product [Saccharomyces cerevisiae]
299.0 [0..660] [839..1]
gi|49641348, gi|... - gi|50304521|ref|XP_452215.1| unnamed protein product [Kluyveromyces lactis], gi|49641348|emb|CAH0106...
gi|49641348 - gi|49641348|emb|CAH01066.1| KLLA0C00484p [Kluyveromyces lactis]
276.0 [0..286] [1094..207]
gi|49655590, gi|... - gi|50422691|ref|XP_459922.1| hypothetical protein DEHA0E14729g [Debaryomyces hansenii CBS767], gi|49...
140.0 [0..639] [1077..803]
gi|46435346, gi|... - gi|68484441|ref|XP_713831.1| hypothetical protein CaO19.8274 [Candida albicans SC5314], gi|46435346|...
orf19.8274 - GIN1 CGDID:CAL0001036 Assembly 19, Contig19-20064 (11161, 14862) CDS, translated using codon table 1...
124.0 [0..657] [1049..789]
gi|49650265 - gi|49650265|emb|CAG79996.1| YALI0E25762p [Yarrowia lipolytica]
gi|50553975, gi|... - gi|50553975|ref|XP_504396.1| YALI0E25762p [Yarrowia lipolytica], gi|49650265|emb|CAG79996.1| YALI0E2...
86.0 [0..456] [852..499]
gi|42547322, gi|... - gi|46136847|ref|XP_390115.1| hypothetical protein FG09939.1 [Gibberella zeae PH-1], gi|42547322|gb|E...
69.0 [0..697] [852..889]
gi|39952341, gi|... - gi|39952341|ref|XP_363887.1| hypothetical protein MGG_01813 [Magnaporthe grisea 70-15], gb|EAA56162....
67.0 [0..711] [852..984]

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Predicted Domain #1
Region A:
Residues: [1-242]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDDALHALSS LTAKKRTTTY KKVAVPILDE NDNTNGNGPN DIDNPPELTG NGFLFANATL  60
   61 NRVKNRLEGK KAPEQNHNNG KDRSENSLPT QLISNLYDGG EELEKSEVKD NSYSEKNVSS 120
  121 SFTQTQRIPV SIQQDKVFNV PIHSVNDGKP TQLIKEDGLV NETSQALKTP LTTGRPGATQ 180
  181 RIDSSGATSQ TQPIKSIEPQ SQIITTSSNH SNALSPKIPI IPTELIGTSP LFQSIQNRGP 240
  241 DT

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [243-564]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 QMDVPPQTAH DEDKTQAIGI PQATHQEQKT QIDTVAQTLQ DEVPHTLKIR EIQSELASED  60
   61 SKREKARNVE YKKPQKPIPT KKFFSKESFL ADFDDSSSNE DDDIKLENAH PKPVQNDDEL 120
  121 HENKSVELNL TDETRINEKR VPLLSSYANN LKREIDSSKC ITLDLDSDSD EYGDDDMDSI 180
  181 KLSKDESVLP ISQLSKATIL NLKARLSKQN QKLSQRPNKS KDPKVDHNVL LNTLRKASRK 240
  241 QILDHQKEVI ETKGLKLEDM AKEKEIVENL LEQEILRNKR IRQKEKRREK LEENDFQLNA 300
  301 HDSGSDSGSE SSGFALSGNE IA

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [565-639]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DYESSGSEND NRRESDSEKE DDEIILKQKK SHHVKHIINE SDSDTEVEAK PKEKADESLP  60
   61 KRIAINLGHY GDNIG

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

    MCM
Score
SCOP
Match
SCOP Description
View Download 0.518 a.118.1 ARM repeat
View Download 0.472 a.8.1 Bacterial immunoglobulin/albumin-binding domains
View Download 0.434 a.4.1 Homeodomain-like
View Download 0.409 a.118.8 TPR-like
View Download 0.408 d.58.11 EF-G/eEF-2 domains III and V
View Download 0.408 d.58.11 EF-G/eEF-2 domains III and V
View Download 0.405 a.60.1 SAM/Pointed domain
View Download 0.404 a.64.1 Saposin
View Download 0.393 a.60.1 SAM/Pointed domain

Predicted Domain #4
Region A:
Residues: [640-893]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 EDTDKFQETN VLDTQNIEEV MAERNTIENE VKDDVYVNEE ADEAIRRQLI DKEKLQLKQK  60
   61 EKEHEAKIKE LKKRGVTNFF EMEAEESEDE WHGIGGADGE GSDDYDSDLE KMIDDYSKNN 120
  121 FNPHEIREML AAENKEMDIK MINKILYDIK NGGFRNKRAK NSLELELSDD DEDDVLQQYR 180
  181 LKRRELMRKR RLEIGDDAKL VKNPKSSAFF ESMVEDIIEY KNPFGAEEEY NLDITSTATD 240
  241 LDTQDNSINV GDNT

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #5
Region A:
Residues: [894-1096]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GNNEQKPVDQ KNKKVIISED FVQKSLSFLK SNNYEDFETD KELSRIQHGN DEAIEDLYTL  60
   61 KQNSSIKSFT NSQTDSTTSK TVNTIIDLEK RPEDEDEVEN GDTSLVGVFK HPSIIKSFAS 120
  121 RTDINDKFKE GNKTVKILKS YKTVGSSKAS ITYMGKTRKL IAPKRKTEGS HRYHHDHHNK 180
  181 KMKMKTKTKS NKLFESGQDS FDN

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle