YRC Public Data Repository - Protein Structure Prediction

Protein:	KRR1
Organism:	Saccharomyces cerevisiae
Length:	316 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for KRR1.

Description	E-value	Query Range	Subject Range
gi\|50422687, gi\|... - gi\|50422687\|ref\|XP_459920.1\| hypothetical protein DEHA0E14685g [Debaryomyces hansenii CBS767], gi\|49... gi\|49655588 - gi\|49655588\|emb\|CAG88162.1\| DEHA2E14146p [Debaryomyces hansenii]	385.0	[0..1]	[314..1]
gi\|50304523, gi\|... - gi\|50304523\|ref\|XP_452216.1\| unnamed protein product [Kluyveromyces lactis], gi\|49641349\|emb\|CAH0106... gi\|49641349 - gi\|49641349\|emb\|CAH01067.1\| KLLA0C00506p [Kluyveromyces lactis]	383.0	[0..1]	[311..1]
KRR1 - KRR1, small subunit (SSU) processome component, homolog (yeast)	381.0	[0..5]	[309..20]
gi\|49524288, gi\|... - gi\|50285113\|ref\|XP_444985.1\| unnamed protein product [Candida glabrata], gi\|49524288\|emb\|CAG57885.1\|... gi\|49524288 - gi\|49524288\|emb\|CAG57885.1\| unnamed protein product [Candida glabrata]	381.0	[0..1]	[314..1]
mis3 - rRNA processing protein Mis3 KRR1_SCHPO - KRR1 small subunit processome component homolog OS=Schizosaccharomyces pombe (strain 972 / ATCC 2484...	380.0	[0..5]	[316..20]
gi\|44985404, gi\|... - gi\|45199264\|ref\|NP_986293.1\| AFR744Wp [Ashbya gossypii ATCC 10895], gi\|44985404\|gb\|AAS54117.1\| AFR74... gi\|44985404 - gi\|44985404\|gb\|AAS54117.1\| AFR744Wp [Ashbya gossypii ATCC 10895]	379.0	[0..1]	[313..1]
gi\|109097817 - gi\|109097817\|ref\|XP_001117587.1\| PREDICTED: HIV-1 rev binding protein 2 [Macaca mulatta]	377.0	[0..5]	[309..20]

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Predicted Domain #1

Region A:
Residues: [1-123]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVSTHNRDKP WDTDDIDKWK IEEFKEEDNA SGQPFAEESS FMTLFPKYRE SYLKTIWNDV  60
   61 TRALDKHNIA CVLDLVEGSM TVKTTRKTYD PAIILKARDL IKLLARSVPF PQAVKILQDD 120
  121 MAC

[Run NCBI BLAST on this sequence.]

Detection Method:	ab initio
Confidence:	12.11
Match:
Description:	No description for 1j4wA was found.

Predicted Domain #2

Region A:
Residues: [124-233]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DVIKIGNFVT NKERFVKRRQ RLVGPNGNTL KALELLTKCY ILVQGNTVSA MGPFKGLKEV  60
   61 RRVVEDCMKN IHPIYHIKEL MIKRELAKRP ELANEDWSRF LPMFKKRNVA

[Run NCBI BLAST on this sequence.]

Detection Method:	ab initio
Confidence:	12.11
Match:
Description:	No description for 1j4wA was found.

Predicted Domain #3

Region A:
Residues: [234-316]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 RKKPKKIRNV EKKVYTPFPP AQLPRKVDLE IESGEYFLSK REKQMKKLNE QKEKQMEREI  60
   61 ERQEERAKDF IAPEEEAYKP NQN

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits