| Protein: | PDI1 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 522 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PDI1.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [1..522] | [1..522] |
|
|
0.0 | [8..497] | [1..488] |
|
|
0.0 | [1..493] | [1..493] |
|
|
0.0 | [8..522] | [1..515] |
|
|
0.0 | [15..496] | [14..491] |
|
|
0.0 | [12..496] | [11..491] |
|
Region A: Residues: [1-142] |
1 11 21 31 41 51
| | | | | |
1 MKFSAGAVLS WSSLLLASSV FAQQEAVAPE DSAVVKLATD SFNEYIQSHD LVLAEFFAPW 60
61 CGHCKNMAPE YVKAAETLVE KNITLAQIDC TENQDLCMEH NIPGFPSLKI FKNSDVNNSI 120
121 DYEGPRTAEA IVQFMIKQSQ PA
|
| Detection Method: |  |
| Confidence: | 239.67837 |
| Match: | 1mek__ |
| Description: | Protein disulfide isomerase, PDI |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [143-309] |
1 11 21 31 41 51
| | | | | |
1 VAVVADLPAY LANETFVTPV IVQSGKIDAD FNATFYSMAN KHFNDYDFVS AENADDDFKL 60
61 SIYLPSAMDE PVVYNGKKAD IADADVFEKW LQVEALPYFG EIDGSVFAQY VESGLPLGYL 120
121 FYNDEEELEE YKPLFTELAK KNRGLMNFVS IDARKFGRHA GNLNMKE
|
| Detection Method: | |
| Confidence: | 9.0 |
| Match: | 1bjx__ |
| Description: | Protein disulfide isomerase, PDI |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [310-370] |
1 11 21 31 41 51
| | | | | |
1 QFPLFAIHDM TEDLKYGLPQ LSEEAFDELS DKIVLESKAI ESLVKDFLKG DASPIVKSQE 60
61 I
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.681 | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.680 | a.4.1 | Homeodomain-like |
| View | Download | 0.729 | a.46.2 | Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain |
| View | Download | 0.649 | a.4.1 | Homeodomain-like |
| View | Download | 0.608 | a.5.2 | UBA-like |
| View | Download | 0.592 | a.4.1 | Homeodomain-like |
| View | Download | 0.531 | a.5.7 | 4-hydroxy-2-oxovalerate aldolase DmpG, communication domain |
| View | Download | 0.507 | a.144.1 | PABC (PABP) domain |
| View | Download | 0.457 | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.434 | a.48.3 | Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 |
| View | Download | 0.431 | a.4.10 | N-terminal Zn binding domain of HIV integrase |
| View | Download | 0.429 | a.60.12 | DNA polymerase beta-like, second domain |
| View | Download | 0.421 | a.5.1 | DNA helicase RuvA subunit, C-terminal domain |
| View | Download | 0.407 | d.68.7 | R3H domain |
| View | Download | 0.402 | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.361 | a.60.9 | lambda integrase-like, N-terminal domain |
| View | Download | 0.322 | a.8.1 | Bacterial immunoglobulin/albumin-binding domains |
| View | Download | 0.308 | a.56.1 | CO dehydrogenase ISP C-domain like |
| View | Download | 0.304 | a.4.1 | Homeodomain-like |
| View | Download | 0.295 | a.64.2 | Bacteriocin AS-48 |
| View | Download | 0.291 | d.58.17 | Metal-binding domain |
| View | Download | 0.280 | a.159.1 | Protein serine/threonine phosphatase 2C, C-terminal domain |
| View | Download | 0.272 | a.35.1 | lambda repressor-like DNA-binding domains |
| View | Download | 0.260 | a.5.1 | DNA helicase RuvA subunit, C-terminal domain |
| View | Download | 0.259 | a.5.1 | DNA helicase RuvA subunit, C-terminal domain |
| View | Download | 0.253 | a.60.1 | SAM/Pointed domain |
| View | Download | 0.252 | a.108.1 | Ribosomal protein L7/12, oligomerisation (N-terminal) domain |
| View | Download | 0.249 | a.60.2 | RuvA domain 2-like |
| View | Download | 0.249 | a.65.1 | Annexin |
| View | Download | 0.245 | a.35.1 | lambda repressor-like DNA-binding domains |
| View | Download | 0.242 | a.179.1 | Replisome organizer (g39p helicase loader/inhibitor protein) |
| View | Download | 0.241 | a.44.1 | Disulphide-bond formation facilitator (DSBA), insertion domain |
| View | Download | 0.236 | c.3.1 | FAD/NAD(P)-binding domain |
| View | Download | 0.234 | a.118.11 | Cytochrome c oxidase subunit E |
| View | Download | 0.231 | a.39.1 | EF-hand |
| View | Download | 0.218 | a.153.1 | Nuclear receptor coactivator interlocking domain |
| View | Download | 0.210 | a.101.1 | Uteroglobin-like |
| View | Download | 0.209 | a.60.11 | Hypothetical protein YjbJ |
| View | Download | 0.206 | d.50.3 | PI-Pfui intein middle domain |
| View | Download | 0.205 | a.60.3 | C-terminal domain of RNA polymerase alpha subunit |
|
Region A: Residues: [371-522] |
1 11 21 31 41 51
| | | | | |
1 FENQDSSVFQ LVGKNHDEIV NDPKKDVLVL YYAPWCGHCK RLAPTYQELA DTYANATSDV 60
61 LIAKLDHTEN DVRGVVIEGY PTIVLYPGGK KSESVVYQGS RSLDSLFDFI KENGHFDVDG 120
121 KALYEEAQEK AAEEADADAE LADEEDAIHD EL
|
| Detection Method: | |
| Confidence: | 94.67837 |
| Match: | 1t7pB_ |
| Description: | Thioredoxin |
Matching Structure (courtesy of the PDB): |
|
