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View Structure Prediction Details

Protein: RNQ1
Organism: Saccharomyces cerevisiae
Length: 405 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RNQ1.

Description E-value Query
Range
Subject
Range
gi|171536 - gi|171536|gb|AAA34615.1| open reading frame [Saccharomyces cerevisiae]
1.0E-69 [1..281] [1..281]

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Predicted Domain #1
Region A:
Residues: [1-405]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDTDKLISEA ESHFSQGNHA EAVAKLTSAA QSNPNDEQMS TIESLIQKIA GYVMDNRSGG  60
   61 SDASQDRAAG GGSSFMNTLM ADSKGSSQTQ LGKLALLATV MTHSSNKGSS NRGFDVGTVM 120
  121 SMLSGSGGGS QSMGASGLAA LASQFFKSGN NSQGQGQGQG QGQGQGQGQG QGSFTALASL 180
  181 ASSFMNSNNN NQQGQNQSSG GSSFGALASM ASSFMHSNNN QNSNNSQQGY NQSYQNGNQN 240
  241 SQGYNNQQYQ GGNGGYQQQQ GQSGGAFSSL ASMAQSYLGG GQTQSNQQQY NQQGQNNQQQ 300
  301 YQQQGQNYQH QQQGQQQQQG HSSSFSALAS MASSYLGNNS NSNSSYGGQQ QANEYGRPQQ 360
  361 NGQQQSNEYG RPQYGGNQNS NGQHESFNFS GNFSQQNNNG NQNRY

[Run NCBI BLAST on this sequence.]

Detection Method: ORFEUS
Confidence: 13.78
Match: 1i3qA
Description: RBP1
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle