| Protein: | AGP1 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 595 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for AGP1.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [1..593] | [1..593] |
|
|
0.0 | [21..587] | [13..563] |
|
|
0.0 | [33..590] | [6..539] |
|
|
0.0 | [21..587] | [13..563] |
|
Region A: Residues: [1-87] |
1 11 21 31 41 51
| | | | | |
1 MSSSKSLYEL KDLKNSSTEI HATGQDNEIE YFETGSNDRP SSQPHLGYEQ HNTSAVRRFF 60
61 DSFKRADQGP QDEVEATQMN DLTSAIS
|
| Detection Method: |  |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.401 | a.74.1 | Cyclin-like |
| View | Download | 0.417 | a.2.3 | Chaperone J-domain |
| View | Download | 0.384 | a.4.13 | Sigma3 and sigma4 domains of RNA polymerase sigma factors |
| View | Download | 0.397 | a.24.13 | Domain of the SRP/SRP receptor G-proteins |
| View | Download | 0.514 | a.20.1 | PGBD-like |
| View | Download | 0.376 | a.80.1 | DNA polymerase III clamp loader subunits, C-terminal domain |
| View | Download | 0.354 | d.58.49 | YajQ-like |
| View | Download | 0.335 | a.29.2 | Bromodomain |
| View | Download | 0.324 | a.74.1 | Cyclin-like |
| View | Download | 0.320 | a.39.2 | Insect pheromon/odorant-binding proteins |
| View | Download | 0.316 | a.6.1 | Putative DNA-binding domain |
| View | Download | 0.309 | a.45.1 | Glutathione S-transferase (GST), C-terminal domain |
| View | Download | 0.281 | a.2.5 | Prefoldin |
| View | Download | 0.274 | a.40.1 | Calponin-homology domain, CH-domain |
| View | Download | 0.271 | a.64.1 | Saposin |
| View | Download | 0.266 | a.138.1 | Multiheme cytochromes |
| View | Download | 0.243 | d.49.1 | Signal recognition particle alu RNA binding heterodimer, SRP9/14 |
| View | Download | 0.233 | d.52.7 | Ribosome-binding factor A, RbfA |
| View | Download | 0.233 | a.39.1 | EF-hand |
| View | Download | 0.222 | a.24.15 | FAD-dependent thiol oxidase |
| View | Download | 0.211 | a.100.1 | 6-phosphogluconate dehydrogenase C-terminal domain-like |
| View | Download | 0.211 | a.118.1 | ARM repeat |
| Term | Confidence | Notes |
| binding | 2.16072293434243 | bayes_pls_golite062009 |
| cytoskeletal protein binding | 1.56123529621268 | bayes_pls_golite062009 |
| protein binding | 1.36724461365736 | bayes_pls_golite062009 |
| tubulin binding | 1.27811933320559 | bayes_pls_golite062009 |
| signal transducer activity | 0.941563416769786 | bayes_pls_golite062009 |
| molecular transducer activity | 0.941563416769786 | bayes_pls_golite062009 |
| microtubule binding | 0.433976380647151 | bayes_pls_golite062009 |
|
Region A: Residues: [88-595] |
1 11 21 31 41 51
| | | | | |
1 PSSRQAQELE KNESSDNIGA NTGHKSDSLK KTIQPRHVLM IALGTGIGTG LLVGNGTALV 60
61 HAGPAGLLIG YAIMGSILYC IIQACGEMAL VYSNLTGGYN AYPSFLVDDG FGFAVAWVYC 120
121 LQWLCVCPLE LVTASMTIKY WTTSVNPDVF VIIFYVLVIT INIFGARGYA EAEFFFNCCK 180
181 ILMMTGFFIL GIIIDVGGAG NDGFIGGKYW HDPGAFNGKH AIDRFKGVAA TLVTAAFAFG 240
241 GSEFIAITTA EQSNPRKAIP GAAKQMIYRI LFLFLATIIL LGFLVPYNSD QLLGSTGGGT 300
301 KASPYVIAVA SHGVRVVPHF INAVILLSVL SMANSSFYSS ARLFLTLSEQ GYAPKVFSYI 360
361 DRAGRPLIAM GVSALFAVIA FCAASPKEEQ VFTWLLAISG LSQLFTWTAI CLSHLRFRRA 420
421 MKVQGRSLGE LGFKSQTGVW GSAYACIMMI LILIAQFWVA IAPIGEGKLD AQAFFENYLA 480
481 MPILIALYVG YKVWHKDWKL FIRETRST
|
| Detection Method: | |
| Confidence: | 202.769551 |
| Match: | PF00324 |
| Description: | Amino acid permease |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
