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View Structure Prediction Details

Protein: YCL020W
Organism: Saccharomyces cerevisiae
Length: 438 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YCL020W.

Description E-value Query
Range
Subject
Range
YNL284C-B - Retrotransposon TYA Gag and TYB Pol genes; transcribed/translated as one unit; polyprotein is proces...
YN11B_YEAST - Transposon Ty1-NL1 Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=T...
554.0 [0..1] [431..1]

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Predicted Domain #1
Region A:
Residues: [1-172]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MESQQLHQNP RSLHGSAYAS VTSKEVPSNQ DPLAVSASNL PEFDRDSTKV NSQQETTPGT  60
   61 SAVPENHHHV SPQPASVPPP QNGQYQQHGM MTPNKAMASN WAHYQQPSMM TCSHYQTSPA 120
  121 YYQPDPHYPL PQYIPPLSTS SPDPIDSQNQ HSEVPQAETK VRNNVLPPHT LT

[Run NCBI BLAST on this sequence.]

Detection Method: Pfam
Confidence: 77.21467
Match: PF01021.9
Description: No description for PF01021.9 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [173-298]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SEENFSTWVK FYIRFLKNSN LGDIIPNDQG EIKRQMTYEE HAYIYNTFQA FAPFHLLPTW  60
   61 VKQILEINYA DILTVLCKSV SKMQTNNQEL KDWIALANLE YDGSTSADTF EITVSTIIQR 120
  121 LKENNI

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

    MCM
Score
SCOP
Match
SCOP Description
View Download 0.836 a.118.11 Cytochrome c oxidase subunit E

Predicted Domain #3
Region A:
Residues: [299-438]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NVSDRLACQL ILKGLSGDFK YLRNQYRTKT NMKLSQLFAE IQLIYDENKI MNLNKPSQYK  60
   61 QHSEYKNVSR TSPNTTNTKV TTRNYQRTNS SKPRAAKAHN IATSSKFSRV NNDHINESTV 120
  121 SSQYLSDDNE LSLRPATERI 

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle