| Protein: | SNF5 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 905 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SNF5.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [1..905] | [1..905] |
|
|
0.0 | [218..744] | [134..648] |
|
|
0.0 | [379..744] | [65..420] |
|
|
4.0E-94 | [427..681] | [115..352] |
|
|
7.0E-94 | [427..676] | [136..368] |
|
|
7.0E-94 | [427..676] | [145..377] |
|
Region A: Residues: [1-123] |
1 11 21 31 41 51
| | | | | |
1 MNNQPQGTNS VPNSIGNIFS NIGTPSFNMA QIPQQLYQSL TPQQLQMIQQ RHQQLLRSRL 60
61 QQQQQQQQQT SPPPQTHQSP PPPPQQSQPI ANQSATSTPP PPPAPHNLHP QIGQVPLAPA 120
121 PIN
|
| Detection Method: |  |
| Confidence: | 9.11 |
| Match: | 1i3qA |
| Description: | RBP1 |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [124-538] |
1 11 21 31 41 51
| | | | | |
1 LPPQIAQLPL ATQQQVLNKL RQQAIAKNNP QVVNAITVAQ QQVQRQIEQQ KGQQTAQTQL 60
61 EQQRQLLVQQ QQQQQLRNQI QRQQQQQFRH HVQIQQQQQK QQQQQQQHQQ QQQQQQQQQQ 120
121 QQQQQQQQQQ QQQQQQQQQQ QQQQQGQIPQ SQQVPQVRSM SGQPPTNVQP TIGQLPQLPK 180
181 LNLPKYQTIQ YDPPETKLPY PTYWSDKKAD TDTLLYEQII QRDKINKYSL IRETNGYDPF 240
241 SIYGFSNKEY ISRLWHTLKY YQDLKNTRMK SITSTSQKIP SASIWGNGYS GYGNGITNTT 300
301 TRVIPQVEVG NRKHYLEDKL KVYKQAMNET SEQLVPIRLE FDQDRDRFFL RDTLLWNKND 360
361 KLIKIEDFVD DMLRDYRFED ATREQHIDTI CQSIQEQIQE FQGNPYIELN QDRLG
|
| Detection Method: | |
| Confidence: | 9.7 |
| Match: | 1m2vB |
| Description: | Sec24 |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [539-905] |
1 11 21 31 41 51
| | | | | |
1 GDDLRIRIKL DIVVGQNQLI DQFEWEISNS DNCPEEFAES MCQELELPGE FVTAIAHSIR 60
61 EQVHMYHKSL ALLGYNFDGS AIEDDDIRSR MLPTITLDDV YRPAAESKIF TPNLLQISAA 120
121 ELERLDKDKD RDTRRKRRQG RSNRRGMLAL SGTSASNTSM NGVHNTVAAG NASSLPPGEI 180
181 LLPDIADIPR TFRTPVPSTL MPGGVDVGPS VESYELRNTT TYKSRPDRPK PVSPPCYIID 240
241 HIPGHSLLLS IKLPGKVNTK EEFAAAPNDT SSGTNAMLPS PESLKTKLNS NIRAGVTIPS 300
301 IPNPIANHTV TNSPNPTLQP VIPGGAASKS VPTPSLPIAP PVAPHDSEAT LLTNSNNGSS 360
361 NNNTQNT
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
