YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: YBR287W
Organism: Saccharomyces cerevisiae
Length: 427 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YBR287W.

Description E-value Query
Range
Subject
Range
YB8B_YEAST - Uncharacterized transporter YBR287W OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YBR2...
YBR287W - Protein of unknown function; green fluorescent protein (GFP)-fusion protein localizes to the ER; YBR...
0.0 [1..427] [1..427]
gi|25406451, gi|... - gi|30699180|ref|NP_849892.1| auxin efflux carrier family protein [Arabidopsis thaliana], pir||B96793...
0.0 [8..415] [5..384]
SPAC5D6.04 - auxin family transmembrane transporter
YDQ4_SCHPO - Uncharacterized transporter C5D6.04 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC5D...
0.0 [7..423] [12..450]

Back

Predicted Domain #1
Region A:
Residues: [1-140]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVETFSFAHL AYLVFESVLQ VVIIALAGFW SASSGLLPKQ SQKIISLLNV DLFTPCLIFS  60
   61 KLAKSLSMAK IFEIAIIPIF FGLTTGISFI SGKIMSRILD LDKDETNFVV ANSVFGNSNS 120
  121 LPVSLTLSLA YTLPNLTWDQ 

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

    MCM
Score
GO
Score
GO
Term
SCOP
Match
SCOP Description
View Download 0.919 N/A N/A a.25.1 Ferritin-like

Predicted Domain #2
Region A:
Residues: [141-427]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 IPNDNRDNVA SRGILYLLIF QQIGQMLRWS WGYNKLMKWS GENTQHMPPS QVQSLLERTP  60
   61 NIDNEELVNE EQEEQELLEE ENNRMNSSFL SSSSIGDKIW QKSCTVFERI RANLNPPLYS 120
  121 MIFAVVVAAI GPLQRELFME DGFINNTFAE AVTQLGSVSI PLILVVLGSN LYPSAEVFPK 180
  181 TVHHSKLLIG SIIGRMILPS CFLLPIIAIA VKYINVSILD DPIFLVVGFL LTVSPPAIQL 240
  241 TQITQLNEFF EAEMADILFW GYAVLSLPVS IIVVSGAIYV LQWANPT

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [252-427]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ANLNPPLYSM IFAVVVAAIG PLQRELFMED GFINNTFAEA VTQLGSVSIP LILVVLGSNL  60
   61 YPSAEVFPKT VHHSKLLIGS IIGRMILPSC FLLPIIAIAV KYINVSILDD PIFLVVGFLL 120
  121 TVSPPAIQLT QITQLNEFFE AEMADILFWG YAVLSLPVSI IVVSGAIYVL QWANPT

[Run NCBI BLAST on this sequence.]

Detection Method: Pfam
Confidence: 3.853872
Match: PF03547.9
Description: No description for PF03547.9 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle