YRC Public Data Repository - Protein Structure Prediction

Protein:	MRPL27
Organism:	Saccharomyces cerevisiae
Length:	146 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for MRPL27.

Description	E-value	Query Range	Subject Range
gi\|7550153 - gi\|7550153\|gb\|AAB21096.2\| mitoribosomal protein YmL27 [Saccharomyces cerevisiae]	242.0	[0..1]	[146..1]
gi\|220957370, gi... - gi\|220957370\|gb\|ACL91228.1\| mRpL41-PA [synthetic construct], gi\|220948124\|gb\|ACL86605.1\| mRpL41-PA [... mRpL41-PA - The gene mitochondrial ribosomal protein L41 is referred to in FlyBase by the symbol Dmel\mRpL41 (CG...	177.0	[0..1]	[145..5]
gi\|114627762 - gi\|114627762\|ref\|XP_001140291.1\| PREDICTED: mitochondrial ribosomal protein L41 [Pan troglodytes] MRPL41 - mitochondrial ribosomal protein L41	163.0	[0..33]	[134..11]
gi\|49524416, gi\|... - gi\|50285369\|ref\|XP_445113.1\| unnamed protein product [Candida glabrata], gi\|49524416\|emb\|CAG58013.1\|... gi\|49524416 - gi\|49524416\|emb\|CAG58013.1\| unnamed protein product [Candida glabrata]	156.0	[0..1]	[146..2]
gi\|109149685 - gi\|109149685\|ref\|XP_001085279.1\| PREDICTED: similar to mitochondrial ribosomal protein L41 [Macaca m...	155.0	[0..33]	[134..11]
gi\|94379857, gi\|... - gi\|94381863\|ref\|XP_995718.1\| PREDICTED: similar to mitochondrial ribosomal protein L41 (predicted) [...	151.0	[0..33]	[134..38]
gi\|76646691 - gi\|76646691\|ref\|XP_582978.2\| PREDICTED: similar to mitochondrial ribosomal protein L41 (predicted) [...	150.0	[0..32]	[134..103]
RM41_DROPS - 39S ribosomal protein L41, mitochondrial OS=Drosophila pseudoobscura pseudoobscura GN=mRpL41 PE=3 SV... RM41_DROPS - 39S ribosomal protein L41, mitochondrial precursor - Drosophila pseudoobscura (Fruit fly)	150.0	[0..25]	[145..29]

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Predicted Domain #1

Region A:
Residues: [1-146]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKGSPISQFS KTSINALTRP WKKYRDGELF YGLSKVGNKR VPLTTKQGNK TMYKGTRASG  60
   61 IGRHTKFGGY VINWKKVRTY VTPDMVNFEL KPYVNANVPP LKHEFKGFSG GPLDPRLQLL 120
  121 KIKEYIVNGR VQSEGATDTS CYKERG

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

		MCM Score	SCOP Match	SCOP Description
View	Download	0.578	b.60.1	Lipocalins
View	Download	0.578	b.60.1	Lipocalins
View	Download	0.481	b.60.1	Lipocalins
View	Download	0.481	b.60.1	Lipocalins
View	Download	0.479	b.60.1	Lipocalins
View	Download	0.424	a.84.1	Scaffolding protein gpD of bacteriophage procapsid
View	Download	0.412	d.129.3	Bet v1-like
View	Download	0.396	a.25.2	Thermoplasma ferritin-like 4-helical bundle
View	Download	0.390	b.60.1	Lipocalins

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits