YRC Public Data Repository - Protein Structure Prediction

Protein:	FMP21
Organism:	Saccharomyces cerevisiae
Length:	130 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for FMP21.

Description	E-value	Query Range	Subject Range
SDHF4_YEAST - Succinate dehydrogenase assembly factor 4, mitochondrial OS=Saccharomyces cerevisiae (strain ATCC 20... gi\|190408581 - gi\|190408581\|gb\|EDV11846.1\| protein FMP21, mitochondrial precursor [Saccharomyces cerevisiae RM11-1a... FMP21 - Putative protein of unknown function; the authentic, non-tagged protein is detected in highly purifi... gi\|151946655 - gi\|151946655\|gb\|EDN64877.1\| conserved protein [Saccharomyces cerevisiae YJM789]	241.0	[0..1]	[121..1]
gi\|49526965, gi\|... - gi\|50290447\|ref\|XP_447655.1\| hypothetical protein CAGL0I09394g [Candida glabrata CBS138], gi\|4952696... gi\|49526965 - gi\|49526965\|emb\|CAG60592.1\| unnamed protein product [Candida glabrata]	163.0	[0..19]	[121..16]
gi\|49644290, gi\|... - gi\|50310269\|ref\|XP_455154.1\| unnamed protein product [Kluyveromyces lactis], gi\|49644290\|emb\|CAG9786... gi\|49644290 - gi\|49644290\|emb\|CAG97861.1\| KLLA0F01639p [Kluyveromyces lactis]	129.0	[0..14]	[121..6]
gi\|44983380 - gi\|44983380\|gb\|AAS52516.1\| AEL169Wp [Ashbya gossypii ATCC 10895] gi\|44983380, gi\|... - gi\|45190438\|ref\|NP_984692.1\| AEL169Wp [Ashbya gossypii ATCC 10895], gi\|44983380\|gb\|AAS52516.1\| AEL16...	126.0	[0..31]	[121..26]
gi\|49652197, gi\|... - gi\|50405785\|ref\|XP_456533.1\| hypothetical protein DEHA0A04884g [Debaryomyces hansenii CBS767], gi\|49...	115.0	[0..32]	[121..26]
orf19.9161, orf1... - orf19.1588 CGDID:CAL0005646 Assembly 19, Contig19-10119 (292169, 292588) CDS, translated using codon... gi\|68466869, gi\|... - gi\|68467148\|ref\|XP_722489.1\| potential mitochondrial protein Fmp21 [Candida albicans SC5314], gi\|684...	89.0	[0..39]	[121..38]
gi\|50543020, gi\|... - gi\|50543020\|ref\|XP_499676.1\| YALI0A02112p [Yarrowia lipolytica], gi\|49645541\|emb\|CAG83599.1\| unnamed... gi\|49645541 - gi\|49645541\|emb\|CAG83599.1\| YALI0A02112p [Yarrowia lipolytica]	69.0	[0..38]	[121..25]
gi\|46137775, gi\|... - gi\|46137775\|ref\|XP_390579.1\| hypothetical protein FG10403.1 [Gibberella zeae PH-1], gi\|42546462\|gb\|E...	68.0	[0..34]	[119..25]
gi\|115384010, gi... - gi\|115384010\|ref\|XP_001208552.1\| conserved hypothetical protein [Aspergillus terreus NIH2624], gi\|11...	59.0	[0..39]	[119..38]
gi\|90304553, gi\|... - gi\|90304553\|gb\|EAS34184.1\| hypothetical protein CIMG_05208 [Coccidioides immitis RS], gi\|119190321\|r...	59.0	[0..39]	[119..47]

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Predicted Domain #1

Region A:
Residues: [1-130]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLCAIKSTGY RYPRTGALNL LRGRPFNMAT RKITTERIPG PPKLPREEQE EFERLQRIAT  60
   61 SQEAIDQYNA QATGDRTKES LNSPLLTKND IGSFSPEFSK TIPEFEGDVN PKTGEVGGPS 120
  121 RTVETRRLFV

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

		MCM Score	SCOP Match	SCOP Description
View	Download	0.206	d.19.1	MHC antigen-recognition domain

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits