YRC Public Data Repository - Protein Structure Prediction

Protein:	MRPL37
Organism:	Saccharomyces cerevisiae
Length:	105 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for MRPL37.

Description	E-value	Query Range	Subject Range
gi\|49526964, gi\|... - gi\|50290445\|ref\|XP_447654.1\| hypothetical protein CAGL0I09372g [Candida glabrata CBS138], gi\|4952696... gi\|49526964 - gi\|49526964\|emb\|CAG60591.1\| unnamed protein product [Candida glabrata]	95.0	[0..1]	[105..1]
gi\|49644292, gi\|... - gi\|50310273\|ref\|XP_455156.1\| unnamed protein product [Kluyveromyces lactis], gi\|49644292\|emb\|CAG9786... gi\|49644292 - gi\|49644292\|emb\|CAG97863.1\| KLLA0F01683p [Kluyveromyces lactis]	93.0	[0..10]	[105..1]
gi\|44983382 - gi\|44983382\|gb\|AAS52518.1\| AEL167Cp [Ashbya gossypii ATCC 10895] gi\|45190440, gi\|... - gi\|45190440\|ref\|NP_984694.1\| AEL167Cp [Ashbya gossypii ATCC 10895], gi\|44983382\|gb\|AAS52518.1\| AEL16...	90.0	[0..4]	[105..5]
gi\|49652148 - gi\|49652148\|emb\|CAG84436.1\| DEHA2A03234p [Debaryomyces hansenii] gi\|49652148, gi\|... - gi\|50405691\|ref\|XP_456484.1\| hypothetical protein DEHA0A03707g [Debaryomyces hansenii CBS767], gi\|49...	75.0	[0..9]	[105..20]
orf19.755, orf19... - MRPL37 CGDID:CAL0001865 Assembly 19, Contig19-10073 (15163, 15525) CDS, translated using codon table... gi\|46435070, gi\|... - gi\|68484998\|ref\|XP_713565.1\| likely mitochondrial ribosome protein MRPL37p [Candida albicans SC5314]...	70.0	[0..27]	[105..45]
gi\|134116604, gi... - gi\|50255594\|gb\|EAL18327.1\| hypothetical protein CNBJ2500 [Cryptococcus neoformans var. neoformans B-... gi\|58260134, gi\|... - gi\|58260134\|ref\|XP_567477.1\| 60s ribosomal protein l37 mitochondrial precursor [Cryptococcus neoform...	62.0	[0..24]	[102..41]
gi\|232514 - gi\|232514\|gb\|AAB19284.1\| YmL37=mitochondrial r-protein [Saccharomyces cerevisiae, Peptide Partial, 3...	61.0	[0..25]	[57..1]
gi\|50556314, gi\|... - gi\|50556314\|ref\|XP_505565.1\| YALI0F18150p [Yarrowia lipolytica], gi\|49651435\|emb\|CAG78374.1\| unnamed... gi\|49651435 - gi\|49651435\|emb\|CAG78374.1\| YALI0F18150p [Yarrowia lipolytica]	59.0	[0..1]	[105..4]
gi\|85111285 - gi\|85111285\|ref\|XP_963864.1\| hypothetical protein [Neurospora crassa OR74A] gi\|32420173, gi\|... - gi\|32420173\|ref\|XP_330530.1\| predicted protein [Neurospora crassa], gi\|28925607\|gb\|EAA34628.1\| predi...	57.0	[0..24]	[103..75]
gi\|115384994, gi... - gi\|115384994\|ref\|XP_001209044.1\| conserved hypothetical protein [Aspergillus terreus NIH2624], gi\|11...	57.0	[0..20]	[64..97]

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Predicted Domain #1

Region A:
Residues: [1-105]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLARSLGYRL ISTSRILYNK PTVKSVVSSC PAGTSLNLNI WKSGKDAVAL EDKEYPNWLW  60
   61 SVLDSDHVVE HAAEDPEGQA LLKRRKNIRK ANRQRIKQNN FLSQL

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	40.283997
Match:	PF08561.1
Description:	No description for PF08561.1 was found.

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.343	N/A	N/A	d.15.4	2Fe-2S ferredoxin-like
View	Download	0.334	N/A	N/A	d.93.1	SH2 domain
View	Download	0.313	N/A	N/A	d.141.1	Ribosomal protein L6

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits