YRC Public Data Repository - Protein Structure Prediction

Protein:	YPT10
Organism:	Saccharomyces cerevisiae
Length:	218 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YPT10.

Description	E-value	Query Range	Subject Range
ARA5_ARATH - Ras-related protein ARA-5 - Arabidopsis thaliana (Mouse-ear cress)	6.0E-86	[17..217]	[57..256]
gi\|1616614 - gi\|1616614\|emb\|CAA69701.1\| small GTP-binding protein [Nicotiana plumbaginifolia]	2.0E-85	[17..217]	[2..201]
gi\|7507776 - gi\|7507776\|pir\|\|T16867 probable cytochrome P450 T13C5.1 [similarity] - Caenorhabditis elegans	2.0E-85	[17..217]	[2..200]
RAB1_DIPOM - Ras-related protein ORAB-1 OS=Diplobatis ommata PE=2 SV=1	4.0E-85	[17..218]	[2..202]
gi\|7643790 - gi\|7643790\|gb\|AAF65510.1\| small GTP-binding protein [Capsicum annuum]	7.0E-85	[17..217]	[2..201]
gi\|1370166 - gi\|1370166\|emb\|CAA98160.1\| RAB1C [Lotus japonicus]	7.0E-85	[17..217]	[2..200]
gi\|303732, gi\|738941 - gi\|738941\|prf\|\|2001457J GTP-binding protein, gi\|303732\|dbj\|BAA02117.1\| GTP-binding protein [Pisum sa...	9.0E-85	[17..217]	[2..201]

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Predicted Domain #1

Region A:
Residues: [1-218]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIVKLLQEIQ VAQNTEEYDM EATIKVVLLG DSSVGKTSIV TRLKSGKFLA KHAATIGAAF  60
   61 ITKTIEVPSN DSSTEKRIHM EIWDTAGQER YKSLVPMYYR DANIALIVFE LGDVSSLQCA 120
  121 KTWFQDLQDR AQGTQVIIVG NKYDLVCEEH SGEVTIPAEL QGLPYVAVSA KTGYNFDTLN 180
  181 KIIISLVPES QFKTLSKNNE QGNILEINKK KSGSGCIC

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	315.855515
Match:	1huqA_
Description:	Rab5c
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits