YRC Public Data Repository - Protein Structure Prediction

Protein:	TRS20
Organism:	Saccharomyces cerevisiae
Length:	175 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for TRS20.

Description	E-value	Query Range	Subject Range
TPPC2_PIG - Trafficking protein particle complex subunit 2 OS=Sus scrofa GN=TRAPPC2 PE=2 SV=2 TPPC2_BOVIN - Trafficking protein particle complex subunit 2 OS=Bos taurus GN=TRAPPC2 PE=2 SV=1	160.0	[0..4]	[173..6]
tr\|M3X8U7\|M3X8U7... - Uncharacterized protein OS=Felis catus GN=TRAPPC2 PE=4 SV=1 TPPC2_CANLF - Trafficking protein particle complex subunit 2 OS=Canis lupus familiaris GN=TRAPPC2 PE=3 SV=1 gi\|149744249 - gi\|149744249\|ref\|XP_001489143.1\| PREDICTED: similar to Trafficking protein particle complex subunit ...	159.0	[0..4]	[173..6]
gi\|11282327, gi\|... - gi\|7406424\|emb\|CAB85533.1\| putative protein [Arabidopsis thaliana], gi\|28827482\|gb\|AAO50585.1\| unkno...	159.0	[0..38]	[171..7]
TPPC2_PONPY - Trafficking protein particle complex subunit 2 - Pongo pygmaeus (Orangutan) TPPC2_PONAB - Trafficking protein particle complex subunit 2 OS=Pongo abelii GN=TRAPPC2 PE=2 SV=1	159.0	[0..4]	[173..6]
TRAPPC2, TRAPPC2P1 - trafficking protein particle complex 2, trafficking protein particle complex 2 pseudogene 1 gi\|109129945, gi... - gi\|109129945\|ref\|XP_001096697.1\| PREDICTED: trafficking protein particle complex 2 [Macaca mulatta],... gi\|90082471 - gi\|90082471\|dbj\|BAE90417.1\| unnamed protein product [Macaca fascicularis] gi\|114687808, gi... - gi\|114687812\|ref\|XP_001136163.1\| PREDICTED: similar to R29515_1 isoform 3 [Pan troglodytes], gi\|1146... gi\|208968153, gi... - gi\|208968153\|dbj\|BAG73915.1\| zinc finger protein 547 [synthetic construct], gi\|190691309\|gb\|ACE87429...	159.0	[0..4]	[173..6]
TPPC2_MOUSE - Trafficking protein particle complex subunit 2 OS=Mus musculus GN=Trappc2 PE=1 SV=1 gi\|68163405, gi\|... - gi\|68163405\|ref\|NP_001020136.1\| trafficking protein particle complex 2 [Rattus norvegicus], gi\|62666...	158.0	[0..4]	[173..6]
gi\|13384832, gi\|... - gi\|13384832\|ref\|NP_079708.1\| trafficking protein particle complex 2 [Mus musculus], gi\|12835553\|dbj\|...	157.0	[0..4]	[173..6]
gi\|44986276 - gi\|44986276\|gb\|AAS54736.1\| AGR246Wp [Ashbya gossypii ATCC 10895] gi\|45201342, gi\|... - gi\|45201342\|ref\|NP_986912.1\| AGR246Wp [Ashbya gossypii ATCC 10895], gi\|44986276\|gb\|AAS54736.1\| AGR24...	155.0	[0..1]	[175..1]

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Predicted Domain #1

Region A:
Residues: [1-175]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPQYFAIIGK KDNPVYEIEF TNAENPQGFP QDLKELNPFI LHASLDIVED LQWQINPTSQ  60
   61 LNGNGGNGSN GGGGFLRSRA VNNTDNCYLG KVDHFYGLAI TAYISYSGMK FVMIHGNSAN 120
  121 SSVVIDDNNM RSFYQEVHEL YVKTLMNPFY KITDPIRSPA FDSRVRTLAR KHLSK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	39.0
Match:	2j3wA
Description:	No description for 2j3wA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits