YRC Public Data Repository - Protein Structure Prediction

Protein:	GPX2
Organism:	Saccharomyces cerevisiae
Length:	162 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for GPX2.

Description	E-value	Query Range	Subject Range
gi\|2982362 - gi\|2982362\|gb\|AAC78466.1\| glutathione peroxidase [Zantedeschia aethiopica]	5.0E-52	[3..161]	[85..243]
gi\|6179600 - gi\|6179600\|emb\|CAB59893.1\| GPX12Hv, glutathione peroxidase-like protein [Hordeum vulgare subsp. vulg...	1.0E-50	[4..161]	[78..235]
gi\|25285632 - pir\|\|F87463 glutathione peroxidase [imported] - Caulobacter crescentus gi\|13423148, gi\|... - gi\|16125974\|ref\|NP_420538.1\| glutathione peroxidase [Caulobacter crescentus CB15], gi\|13423148\|gb\|AA... gi\|221234741, gi... - gi\|221234741\|ref\|YP_002517177.1\| glutathione peroxidase [Caulobacter crescentus NA1000], gi\|22096391...	2.0E-50	[1..160]	[1..160]
GPX6_ARATH - Probable phospholipid hydroperoxide glutathione peroxidase 6, mitochondrial OS=Arabidopsis thaliana ...	5.0E-50	[3..160]	[71..228]
GPX4_SOLLC - Probable phospholipid hydroperoxide glutathione peroxidase OS=Solanum lycopersicum GN=GPXle-1 PE=2 S...	6.0E-49	[3..160]	[9..166]
BSAA_BACSU - Glutathione peroxidase homolog BsaA OS=Bacillus subtilis GN=bsaA PE=3 SV=1 BSAA_BACSU - Glutathione peroxidase homolog BsaA OS=Bacillus subtilis (strain 168) GN=bsaA PE=3 SV=1 gi\|221323623 - gi\|221323623\|ref\|ZP_03604917.1\| glutathione peroxidase [Bacillus subtilis subsp. subtilis str. SMY] gi\|221319348 - gi\|221319348\|ref\|ZP_03600642.1\| glutathione peroxidase [Bacillus subtilis subsp. subtilis str. JH642... gi\|221314425 - gi\|221314425\|ref\|ZP_03596230.1\| glutathione peroxidase [Bacillus subtilis subsp. subtilis str. NCIB ...	1.0E-48	[3..162]	[1..160]
GPX4_MESCR - Probable phospholipid hydroperoxide glutathione peroxidase OS=Mesembryanthemum crystallinum GN=GPXMC...	1.0E-48	[3..160]	[10..167]
gi\|18309893, gi\|... - gi\|18309893\|ref\|NP_561827.1\| glutathione peroxidase [Clostridium perfringens str. 13], gi\|18144571\|d... gi\|169346931, gi... - gi\|169346931\|ref\|ZP_02865879.1\| glutathione peroxidase [Clostridium perfringens C str. JGS1495], gi\|... gi\|177909775, gi... - gi\|182624978\|ref\|ZP_02952756.1\| glutathione peroxidase [Clostridium perfringens D str. JGS1721], gi\|... gi\|170663489, gi... - gi\|170663489\|gb\|EDT16172.1\| glutathione peroxidase [Clostridium perfringens E str. JGS1987], gi\|1682... gi\|170716055, gi... - gi\|170716055\|gb\|EDT28237.1\| glutathione peroxidase [Clostridium perfringens CPE str. F4969], gi\|1682... gi\|168216219, gi... - gi\|182381756\|gb\|EDT79235.1\| glutathione peroxidase [Clostridium perfringens NCTC 8239], gi\|168216219...	2.0E-48	[3..161]	[1..158]
GPX4_CITSI - Probable phospholipid hydroperoxide glutathione peroxidase OS=Citrus sinensis GN=CSA PE=1 SV=1 gi\|119367482 - gi\|119367482\|gb\|ABL67656.1\| putative phospholipid hydroperoxide glutathione peroxidase [Citrus cv. S... gi\|119367482 - gi\|119367482\|gb\|ABL67656.1\| putative phospholipid hydroperoxide glutathione peroxidase [Citrus cv. S...	3.0E-48	[4..161]	[8..165]

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Predicted Domain #1

Region A:
Residues: [1-162]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTTSFYDLEC KDKKGESFKF DQLKGKVVLI VNVASKCGFT PQYKELEELY KKYQDKGFVI  60
   61 LGFPCNQFGK QEPGSDEQIT EFCQLNYGVT FPIMKKIDVN GSNADSVYNY LKSQKAGLLG 120
  121 FKGIKWNFEK FLVDSNGKVV QRFSSLTKPS SLDQEIQSLL SK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	229.533179
Match:	1gp1A_
Description:	Glutathione peroxidase
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits