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View Structure Prediction Details

Protein: YBR225W
Organism: Saccharomyces cerevisiae
Length: 900 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YBR225W.

Description E-value Query
Range
Subject
Range
YBR225W - Putative protein of unknown function; non-essential gene identified in a screen for mutants affected...
YB75_YEAST - Uncharacterized protein YBR225W OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YBR225W ...
0.0 [1..900] [1..900]

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Predicted Domain #1
Region A:
Residues: [1-900]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGSNKEAKNI DSKNDRGLTS ITSNKISNLK AHDNHTSSMI TEHKNADKEK GKQEKESRNG  60
   61 TTQSSSSVES HSPQVSHHSD KLSSFDSPLH LPNFRLADDL FSNSSRRSSD SAASSSVSKL 120
  121 KSAQLSKIGL HHHHTSNNKH SHRSGTPTSE VKANYSPDPS APRFIVSNMV GNGRGGGGLH 180
  181 GATSNVVKKL HSRKKWDWNT LPASDSSLLI KTVSGNHNLI NICIDGEFKQ IMYDPNHNEL 240
  241 FNRMDLFLSF NMDSSPEDSL IFAKKRLRSY IDFLTKYLES RKYAFECYPF NIENIINIET 300
  301 EVKCFPSFDP LKDYSEIESL IQLWLAQSQK FLLQSNSFFF SSEVVEELIK RKPTTRQHSN 360
  361 PTISTTSNKI SDPTLYIQQL DIEANSPRPV ISDPLDEIDI LLIRPLHKTL GGWQLAYDEP 420
  421 SLNIADFALD LSPWMIDSSD NDAQNKNASE IAPEYLTNLQ NYLPRKGSRA KIVSDEQEVI 480
  481 ELNSSNASEY MYDCMNRKFF TDDAKERISR NNFNQGVEED PLNDQFASSR SLSLPSSGAD 540
  541 AVKRKKSPTK ATKKSGFVNF FKRKHSQLAS TSHTTSPSVS PSISSSSSPK IQPQSHISSP 600
  601 PRTEKAPHVK SANQAHQNEW LENFFCRTLN NYKEIDLPTQ FILPKEVKRS SNAQLQPEDE 660
  661 PPLSSPISSN SDNSFPNEGL DRAKSAAIYG KEYLKLRLPF ASDTIPAVIC PWVWTSLSYY 720
  721 KWKALLREIY RSIIPGGYAL AIVPDLRISN TYYTGILGNA DAEKANNSSE EFLTTKERDK 780
  781 TFDAMAIDAI NKGLHIHPTK HLTRTFKDVG FTGIKSSVLS LKTGDFKTDM GFLNEFNSLD 840
  841 MWDYMLRRQL PDSSCPPKDT DPTTLFKRYV EEHIGKIDDN AGCFRTLYVV AQKPKLPYTK 900
  901 

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [195-393]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KWDWNTLPAS DSSLLIKTVS GNHNLINICI DGEFKQIMYD PNHNELFNRM DLFLSFNMDS  60
   61 SPEDSLIFAK KRLRSYIDFL TKYLESRKYA FECYPFNIEN IINIETEVKC FPSFDPLKDY 120
  121 SEIESLIQLW LAQSQKFLLQ SNSFFFSSEV VEELIKRKPT TRQHSNPTIS TTSNKISDPT 180
  181 LYIQQLDIEA NSPRPVISD

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [394-596]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PLDEIDILLI RPLHKTLGGW QLAYDEPSLN IADFALDLSP WMIDSSDNDA QNKNASEIAP  60
   61 EYLTNLQNYL PRKGSRAKIV SDEQEVIELN SSNASEYMYD CMNRKFFTDD AKERISRNNF 120
  121 NQGVEEDPLN DQFASSRSLS LPSSGADAVK RKKSPTKATK KSGFVNFFKR KHSQLASTSH 180
  181 TTSPSVSPSI SSSSSPKIQP QSH

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #4
Region A:
Residues: [597-900]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ISSPPRTEKA PHVKSANQAH QNEWLENFFC RTLNNYKEID LPTQFILPKE VKRSSNAQLQ  60
   61 PEDEPPLSSP ISSNSDNSFP NEGLDRAKSA AIYGKEYLKL RLPFASDTIP AVICPWVWTS 120
  121 LSYYKWKALL REIYRSIIPG GYALAIVPDL RISNTYYTGI LGNADAEKAN NSSEEFLTTK 180
  181 ERDKTFDAMA IDAINKGLHI HPTKHLTRTF KDVGFTGIKS SVLSLKTGDF KTDMGFLNEF 240
  241 NSLDMWDYML RRQLPDSSCP PKDTDPTTLF KRYVEEHIGK IDDNAGCFRT LYVVAQKPKL 300
  301 PYTK

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 1.31
Match: 1vl5A
Description: Crystal structure of hypothetical protein (BH2331) from Bacillus halodurans at 1.95 A resolution
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
catalytic activity 0.403277401956396 bayes_pls_golite062009
transferase activity 0.318650776741261 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle