| Protein: | YBP1 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 674 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YBP1.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [1..674] | [1..674] |
|
Region A: Residues: [1-81] |
1 11 21 31 41 51
| | | | | |
1 MEPIDDILFE VTDAFKTQKE DLLELVTLID IYGEQVNQEG SYEEKTRFIE TLNTLLEDNP 60
61 STTGEIGWDL PKGLLKFLSK D
|
|
Region B: Residues: [555-565] |
1 11 21 31 41 51
| | | | | |
1 DLIVEKLSKL K
|
| Detection Method: |  |
| Confidence: | 7.98 |
| Match: | 1bgxT |
| Description: | 5' to 3' exonuclease domain of DNA polymerase Taq; Exonuclease domain of prokaryotic DNA polymerase; DNA polymerase I (Klenow fragment) |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [82-130] |
1 11 21 31 41 51
| | | | | |
1 NVDVNGRLGT NMIVQGVMKC FYAISIQGEP KKCLITGLEL LSSLCSKDF
|
| Detection Method: | |
| Confidence: | 7.98 |
| Match: | 1bgxT |
| Description: | 5' to 3' exonuclease domain of DNA polymerase Taq; Exonuclease domain of prokaryotic DNA polymerase; DNA polymerase I (Klenow fragment) |
| Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [131-327] |
1 11 21 31 41 51
| | | | | |
1 SKSDQQNKED FVDKKANTLP PEGVIENSSN RKDFPSYGES KSSNEFFLKL KSYILFEFIG 60
61 ASLKRISTLF PSKYLGAAVS TIEKFVYSHA DTFEDALFLL RRVYTFCRNY IPPDPPKDIQ 120
121 LNEDFTREMF DKVVEEESEL QVRLLRRLCT FGISTPIKTV TTNADVKYYC ALNQQKFELS 180
181 AYYTEYLELF CRYYQMA
|
|
Region B: Residues: [380-554] |
1 11 21 31 41 51
| | | | | |
1 VQKAAKEKNV GLDYNGVILF SGIHYLETNQ HLVKEMNITD AIYLYLRFTT PSLYSKVYYN 60
61 VAVESVSRYW LWYAITTEPL EDVKKELKNL SVFVTKTLLH VLLQKNCIQV NQQLRMITFT 120
121 LLTRLLCLIP EKVAFEFILD VLKTSPLPLA KTSVLCVFKD LSRRRISTKD NDSET
|
|
Region C: Residues: [566-674] |
1 11 21 31 41 51
| | | | | |
1 VNDSNKAQQS NIRHYIQLDS SKMKAVHDCC LQTIQDSFTA DAKKSDILLL LTYLNIFIVL 60
61 KKTWDEDLLK IVCSKIDSNL KSVEPDKLPK YKEIVDKNES LNDYFTGIK
|
| Detection Method: | |
| Confidence: | 7.98 |
| Match: | 1bgxT |
| Description: | 5' to 3' exonuclease domain of DNA polymerase Taq; Exonuclease domain of prokaryotic DNA polymerase; DNA polymerase I (Klenow fragment) |
| Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [328-379] |
1 11 21 31 41 51
| | | | | |
1 FSLDVDIEGE FQNVIKECRI IYKSVPQEIS AVNDEAKLVL ERMVYKLAYT FE
|
| Detection Method: | |
| Confidence: | 7.98 |
| Match: | 1bgxT |
| Description: | 5' to 3' exonuclease domain of DNA polymerase Taq; Exonuclease domain of prokaryotic DNA polymerase; DNA polymerase I (Klenow fragment) |
| Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [569-674] |
1 11 21 31 41 51
| | | | | |
1 SNKAQQSNIR HYIQLDSSKM KAVHDCCLQT IQDSFTADAK KSDILLLLTY LNIFIVLKKT 60
61 WDEDLLKIVC SKIDSNLKSV EPDKLPKYKE IVDKNESLND YFTGIK
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.875 | a.74.1 | Cyclin-like |
| View | Download | 0.825 | a.74.1 | Cyclin-like |
| View | Download | 0.799 | a.7.6 | Ribosomal protein S20 |
| View | Download | 0.769 | a.118.11 | Cytochrome c oxidase subunit E |
| View | Download | 0.763 | a.27.1 | Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases |
