YRC Public Data Repository - Protein Structure Prediction

Protein:	ERV15
Organism:	Saccharomyces cerevisiae
Length:	142 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ERV15.

Description	E-value	Query Range	Subject Range
gi\|109105438 - gi\|109105438\|ref\|XP_001118044.1\| PREDICTED: similar to cornichon homolog 2 [Macaca mulatta]	174.0	[0..14]	[135..147]
gi\|113422964 - gi\|113422964\|ref\|XP_001129488.1\| PREDICTED: similar to cornichon homolog 2 [Homo sapiens]	166.0	[0..26]	[135..201]
gi\|74181821 - gi\|74181821\|dbj\|BAE32615.1\| unnamed protein product [Mus musculus]	162.0	[0..5]	[136..6]
CNIH4_ARATH - Protein cornichon homolog 4 OS=Arabidopsis thaliana GN=At1g12390 PE=1 SV=1	161.0	[0..6]	[136..4]
ORFP:8545 - YGL054C, Contig c21 658-1074 gi\|151943750 - gi\|151943750\|gb\|EDN62060.1\| ER vesicle protein [Saccharomyces cerevisiae YJM789] gi\|190407014 - gi\|190407014\|gb\|EDV10281.1\| 14 kDa protein found on ER-derived vesicles [Saccharomyces cerevisiae RM... ERV14 - Protein localized to COPII-coated vesicles, involved in vesicle formation and incorporation of speci... ERV14_YEAST - ER-derived vesicles protein ERV14 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=ERV14 ...	158.0	[0..5]	[139..2]
gi\|224051950, gi... - gi\|224051950\|ref\|XP_002200654.1\| PREDICTED: putative cornichon-like [Taeniopygia guttata], gi\|197127... gi\|73759939, gi\|... - gi\|74136747\|ref\|NP_001028178.1\| cornichon-like [Gallus gallus], gi\|73759939\|dbj\|BAE20187.1\| cornicho...	156.0	[0..5]	[136..6]
gi\|56118470, gi\|... - gi\|89269111\|emb\|CAJ81847.1\| cornichon homolog (Drosophila) [Xenopus tropicalis], gi\|56118470\|ref\|NP_...	156.0	[0..5]	[136..6]
gi\|148224474, gi... - gi\|51513022\|gb\|AAH80391.1\| MGC82102 protein [Xenopus laevis], gi\|148224474\|ref\|NP_001087588.1\| MGC82...	155.0	[0..5]	[136..6]

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Predicted Domain #1

Region A:
Residues: [1-142]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSGTGLSLFV TGLILNCLNS ICQIYFTILY GDLEADYINS IELCKRVNRL SVPEAILQAF  60
   61 ISALFLFNGY WFVFLLNVPV LAYNASKVYK KTHLLDATDI FRKLGRCKIE CFLKLGFYLL 120
  121 IFFFYFYRMV TALLENDANL IS

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	73.677781
Match:	PF03311.5
Description:	No description for PF03311.5 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.948	N/A	N/A	a.47.2	t-snare proteins

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits