YRC Public Data Repository - Protein Structure Prediction

Protein:	RIM2
Organism:	Saccharomyces cerevisiae
Length:	377 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RIM2.

Description	E-value	Query Range	Subject Range
RIM2 - Mitochondrial pyrimidine nucleotide transporter; imports pyrimidine nucleoside triphosphates and exp... gi\|190408658 - gi\|190408658\|gb\|EDV11923.1\| mitochondrial carrier protein RIM2 [Saccharomyces cerevisiae RM11-1a] RIM2_YEAST - Mitochondrial carrier protein RIM2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RIM2 ...	6.0E-84	[30..377]	[30..377]
ADT3_BOVIN - ADP/ATP translocase 3 OS=Bos taurus GN=SLC25A6 PE=1 SV=3	8.0E-83	[46..376]	[2..298]
gi\|90085585 - gi\|90085585\|dbj\|BAE91533.1\| unnamed protein product [Macaca fascicularis] SLC25A6 - solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6	3.0E-82	[46..376]	[2..298]
ADT1_MOUSE - ADP/ATP translocase 1 OS=Mus musculus GN=Slc25a4 PE=1 SV=4	4.0E-81	[47..375]	[3..297]
gi\|148224610, gi... - gi\|7542476\|gb\|AAF63471.1\|AF231347_1 adenine nucleotide translocase [Xenopus laevis], gi\|27882617\|gb\|...	5.0E-81	[46..376]	[2..298]

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Predicted Domain #1

Region A:
Residues: [1-170]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPKKSIEEWE EDAIESVPYL ASDEKGSNYK EATQIPLNLK QSEIENHPTV KPWVHFVAGG  60
   61 IGGMAGAVVT CPFDLVKTRL QSDIFLKAYK SQAVNISKGS TRPKSINYVI QAGTHFKETL 120
  121 GIIGNVYKQE GFRSLFKGLG PNLVGVIPAR SINFFTYGTT KDMYAKAFNN

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	35.958607
Match:	PF00153
Description:	Mitochondrial carrier protein

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [171-276]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GQETPMIHLM AAATAGWATA TATNPIWLIK TRVQLDKAGK TSVRQYKNSW DCLKSVIRNE  60
   61 GFTGLYKGLS ASYLGSVEGI LQWLLYEQMK RLIKERSIEK FGYQAE

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	30.769551
Match:	PF00153
Description:	Mitochondrial carrier protein

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [277-377]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GTKSTSEKVK EWCQRSGSAG LAKFVASIAT YPHEVVRTRL RQTPKENGKR KYTGLVQSFK  60
   61 VIIKEEGLFS MYSGLTPHLM RTVPNSIIMF GTWEIVIRLL S

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	19.853872
Match:	PF00153
Description:	Mitochondrial carrier protein

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits