YRC Public Data Repository - Protein Structure Prediction

Protein:	RPL21A
Organism:	Saccharomyces cerevisiae
Length:	160 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RPL21A.

Description	E-value	Query Range	Subject Range
gi\|94407199, gi\|... - gi\|94408319\|ref\|XP_983634.1\| PREDICTED: similar to ribosomal protein L21 isoform 2 [Mus musculus], g... gi\|109468498, gi... - gi\|62645460\|ref\|XP_575183.1\| PREDICTED: similar to ribosomal protein L21 [Rattus norvegicus], gi\|557...	1.0E-70	[1..157]	[1..157]
RL21_RAT - 60S ribosomal protein L21 OS=Rattus norvegicus GN=Rpl21 PE=1 SV=3 gi\|57686 - gi\|57686\|emb\|CAA33286.1\| rpL21 protein [Rattus rattus]	2.0E-70	[1..157]	[1..157]
gi\|808090 - gi\|808090\|gb\|AAA93231.1\| ribosomal protein L21	6.0E-68	[1..157]	[1..157]
gi\|15293909 - gi\|15293909\|gb\|AAK95147.1\|AF401575_1 ribosomal protein L21 [Ictalurus punctatus]	1.0E-63	[1..157]	[1..157]
gi\|190408659 - gi\|190408659\|gb\|EDV11924.1\| ribosomal protein L21A [Saccharomyces cerevisiae RM11-1a] RPL21A - Protein component of the large (60S) ribosomal subunit, nearly identical to Rpl21Bp and has similari... gi\|151946578 - gi\|151946578\|gb\|EDN64800.1\| ribosomal protein L21A [Saccharomyces cerevisiae YJM789] RL21A_YEAST - 60S ribosomal protein L21-A OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RPL21A PE=1 ...	1.0E-57	[1..160]	[1..160]
gi\|15213768 - gi\|15213768\|gb\|AAK92159.1\|AF400187_1 ribosomal protein L21 [Spodoptera frugiperda]	1.0E-56	[1..157]	[1..156]
RL21B_SCHPO - 60S ribosomal protein L21-B OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=rpl2102 PE=2 S... rpl2102 - 60S ribosomal protein L21	5.0E-55	[1..160]	[1..160]

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Predicted Domain #1

Region A:
Residues: [1-160]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGKSHGYRSR TRYMFQRDFR KHGAVHLSTY LKVYKVGDIV DIKANGSIQK GMPHKFYQGK  60
   61 TGVVYNVTKS SVGVIINKMV GNRYLEKRLN LRVEHIKHSK CRQEFLERVK ANAAKRAEAK 120
  121 AQGVAVQLKR QPAQPRESRI VSTEGNVPQT LAPVPYETFI

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	488.228787
Match:	1k5yQ_
Description:	No description for 1k5yQ_ was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits