YRC Public Data Repository - Protein Structure Prediction

Protein:	PCH2
Organism:	Saccharomyces cerevisiae
Length:	564 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PCH2.

Description	E-value	Query Range	Subject Range
CDC48_EMENI - Cell division control protein 48 OS=Emericella nidulans GN=cdc48 PE=1 SV=1 gi\|67900534, gi\|... - gi\|67900534\|ref\|XP_680523.1\| hypothetical protein AN7254.2 [Aspergillus nidulans FGSC A4], ref\|XP_41...	6.0E-82	[12..563]	[236..781]
TER94-PA - The gene TER94 is referred to in FlyBase by the symbol Dmel\TER94 (CG2331, FBgn0261014). It is a pro... gi\|220942716 - gi\|220942716\|gb\|ACL83901.1\| TER94-PA [synthetic construct]	1.0E-81	[12..563]	[208..749]
CDC48_SOYBN - Cell division cycle protein 48 homolog OS=Glycine max GN=CDC48 PE=2 SV=1	1.0E-81	[12..563]	[215..756]
gi\|7378614, gi\|1... - gi\|7378614\|emb\|CAB83290.1\| transitional endoplasmic reticulum ATPase [Arabidopsis thaliana], gi\|1126...	2.0E-81	[12..563]	[247..788]
CDC48_CAPAN - Cell division cycle protein 48 homolog OS=Capsicum annuum GN=CAFP PE=2 SV=1	3.0E-81	[12..563]	[215..754]
gi\|125574941, gi... - gi\|37534770\|ref\|NP_921687.1\| putative endoplasmic reticulum membrane fusion protein [Oryza sativa (j...	4.0E-81	[12..563]	[217..766]
gi\|2853003 - gi\|2853003\|gb\|AAC02215.1\| valosin-containing protein homolog [Trypanosoma brucei]	4.0E-80	[21..563]	[205..737]

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Predicted Domain #1

Region A:
Residues: [1-564]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSYIVDLQVR GSSLRVIKCM FREDEQISSL HSGSDSKQNS NKKLGEFLNL LKAVVKRKLE  60
   61 SFPKDRLKTS IITGQELMRE GQGSIEIKDP PTEAQQHLIR SLAKVLLHQF SSINGKVNTV 120
  121 NEGQDNLFLS LFVKKISIEQ QSTSHVSIKL NFHEKINLGQ HIDSILDSEE TNESDTYHMG 180
  181 SVDEFIIYPF CCLEEQDELK NGSILSTEFD KIDLELDEDD GFEGETLNNC INSVGNFDIP 240
  241 LSKQTLNLVN ISYLPGTTFE GQWESLYFGN NIKERLYSYA TISLKIARFK QTGDSNQEDI 300
  301 TTLITNNKLL LVHGPPGTGK TTLCKALCQK LSVRREFSDG SDTIDTNYKG IIIELSCARI 360
  361 FSKWFGESSK NISIVFKDIE ELLKVNEGRG IFICLLIDEV EAIASSRTNL SSRNESTDGI 420
  421 RVVNTLLTQL DRLKKYHNFL ALATSNLLDS LDDAFVDRAD GVFYVGNPTA EGILHILKVC 480
  481 IEEMITSGII LFHARSTGVK FFNKYQDILR KIAIKCSTVD ISGRTIRKLP LMCLSEYFRT 540
  541 FPVDDDEFVL ALAMSARKLS AARK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	78.09691
Match:	1oz4A_
Description:	VCP/p97
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits