YRC Public Data Repository - Protein Structure Prediction

Protein:	SEC66
Organism:	Saccharomyces cerevisiae
Length:	206 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SEC66.

Description	E-value	Query Range	Subject Range
SEC66 - Non-essential subunit of Sec63 complex (Sec63p, Sec62p, Sec66p and Sec72p); with Sec61 complex, Kar2... gi\|151946561 - gi\|151946561\|gb\|EDN64783.1\| Sec63 complex subunit [Saccharomyces cerevisiae YJM789] gi\|190408676 - gi\|190408676\|gb\|EDV11941.1\| glycoprotein complexed with Sec62p and Sec63p in the Sec63 complex [Sacc... SEC66_YEAST - Translocation protein SEC66 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SEC66 PE=1 S...	6.0E-94	[1..206]	[1..206]
SEC66_SCHPO - Translocation protein sec66 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=sec66 PE=1 SV=... sec66 - ER protein translocation subcomplex subunit Sec66	2.0E-69	[28..195]	[2..168]
gi\|19068813, gi\|... - gi\|19074171\|ref\|NP_584777.1\| similarity to TRANSLOCATION PROTEIN SEC66 [Encephalitozoon cuniculi GB-... gi\|19074171 - ref\|NP_584777.1\| similarity to TRANSLOCATION PROTEIN SEC66 [Encephalitozoon cuniculi]	0.001	[34..164]	[3..125]

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Predicted Domain #1

Region A:
Residues: [1-206]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSEFNETKFS NNGTFFETEE PIVETKSISV YTPLIYVFIL VVSLVMFASS YRKKQAKKIS  60
   61 EQPSIFDEND AHDLYFQIKE MSENEKIHEK VLKAALLNRG AESVRRSLKL KELAPQINLL 120
  121 YKNGSIGEDY WKRFETEVKL IELEFKDTLQ EAERLQPGWV QLFVMVCKEI CFNQALSRRY 180
  181 QSILKRKEVC IKEWELKINN DGRLVN

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits