| Protein: | NPL4 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 580 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for NPL4.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [1..580] | [1..580] |
|
|
0.0 | [1..580] | [5..560] |
|
|
0.0 | [1..580] | [5..560] |
|
|
0.0 | [1..539] | [1..532] |
|
|
0.0 | [117..580] | [87..547] |
|
Region A: Residues: [1-208] |
1 11 21 31 41 51
| | | | | |
1 MLIRFRSKNG THRVSCQEND LFGTVIEKLV GNLDPNADVD TFTVCEKPGQ GIHAVSELAD 60
61 RTVMDLGLKH GDMLILNYSD KPANEKDGVN VEIGSVGIDS KGIRQHRYGP LRIKELAVDE 120
121 ELEKEDGLIP RQKSKLCKHG DRGMCEYCSP LPPWDKEYHE KNKIKHISFH SYLKKLNENA 180
181 NKKENGSSYI SPLSEPDFRI NKRCHNGH
|
| Detection Method: |  |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [209-580] |
1 11 21 31 41 51
| | | | | |
1 EPWPRGICSK CQPSAITLQQ QEFRMVDHVE FQKSEIINEF IQAWRYTGMQ RFGYMYGSYS 60
61 KYDNTPLGIK AVVEAIYEPP QHDEQDGLTM DVEQVKNEML QIDRQAQEMG LSRIGLIFTD 120
121 LSDAGAGDGS VFCKRHKDSF FLSSLEVIMA ARHQTRHPNV SKYSEQGFFS SKFVTCVISG 180
181 NLEGEIDISS YQVSTEAEAL VTADMISGST FPSMAYINDT TDERYVPEIF YMKSNEYGIT 240
241 VKENAKPAFP VDYLLVTLTH GFPNTDTETN SKFVSSTGFP WSNRQAMGQS QDYQELKKYL 300
301 FNVASSGDFN LLHEKISNFH LLLYINSLQI LSPDEWKLLI ESAVKNEWEE SLLKLVSSAG 360
361 WQTLVMILQE SG
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [185-480] |
1 11 21 31 41 51
| | | | | |
1 NGSSYISPLS EPDFRINKRC HNGHEPWPRG ICSKCQPSAI TLQQQEFRMV DHVEFQKSEI 60
61 INEFIQAWRY TGMQRFGYMY GSYSKYDNTP LGIKAVVEAI YEPPQHDEQD GLTMDVEQVK 120
121 NEMLQIDRQA QEMGLSRIGL IFTDLSDAGA GDGSVFCKRH KDSFFLSSLE VIMAARHQTR 180
181 HPNVSKYSEQ GFFSSKFVTC VISGNLEGEI DISSYQVSTE AEALVTADMI SGSTFPSMAY 240
241 INDTTDERYV PEIFYMKSNE YGITVKENAK PAFPVDYLLV TLTHGFPNTD TETNSK
|
| Detection Method: | |
| Confidence: | 3.24 |
| Match: | 2og4A |
| Description: | No description for 2og4A was found. |
|
Region A: Residues: [481-580] |
1 11 21 31 41 51
| | | | | |
1 FVSSTGFPWS NRQAMGQSQD YQELKKYLFN VASSGDFNLL HEKISNFHLL LYINSLQILS 60
61 PDEWKLLIES AVKNEWEESL LKLVSSAGWQ TLVMILQESG
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
