YRC Public Data Repository - Protein Structure Prediction

Protein:	POP7
Organism:	Saccharomyces cerevisiae
Length:	140 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for POP7.

Description	E-value	Query Range	Subject Range
gi\|51013111 - gi\|51013111\|gb\|AAT92849.1\| YBR167C [Saccharomyces cerevisiae]	259.0	[0..1]	[140..1]
gi\|49644198 - gi\|49644198\|emb\|CAH00150.1\| KLLA0E24663p [Kluyveromyces lactis] gi\|50310099, gi\|... - gi\|50310099\|ref\|XP_455063.1\| unnamed protein product [Kluyveromyces lactis], gi\|49644198\|emb\|CAH0015...	124.0	[0..17]	[138..13]
gi\|49528923 - gi\|49528923\|emb\|CAG62585.1\| unnamed protein product [Candida glabrata] gi\|50294396, gi\|... - gi\|50294396\|ref\|XP_449609.1\| hypothetical protein CAGL0M06039g [Candida glabrata CBS138], gi\|4952892...	102.0	[0..11]	[139..2]
gi\|44986166 - gi\|44986166\|gb\|AAS54706.1\| AGR216Wp [Ashbya gossypii ATCC 10895] gi\|45201312, gi\|... - gi\|45201312\|ref\|NP_986882.1\| AGR216Wp [Ashbya gossypii ATCC 10895], gi\|44986166\|gb\|AAS54706.1\| AGR21...	92.0	[0..13]	[139..7]
gi\|50427753, gi\|... - gi\|50427753\|ref\|XP_462489.1\| hypothetical protein DEHA0G23056g [Debaryomyces hansenii CBS767], gi\|49...	88.0	[0..13]	[140..18]
orf19.11644 - orf19.4168 CGDID:CAL0005787 Assembly 19, Contig19-20200 (23902, 23399) CDS, reverse complemented, tr... gi\|46434184, gi\|... - gi\|68486687\|ref\|XP_712772.1\| potential RNAseP/MRP complex component [Candida albicans SC5314], gi\|46...	77.0	[0..5]	[140..6]
gi\|49645544 - gi\|49645544\|emb\|CAG83602.1\| YALI0A02178p [Yarrowia lipolytica] gi\|49645544, gi\|... - gi\|50543026\|ref\|XP_499679.1\| YALI0A02178p [Yarrowia lipolytica], gi\|49645544\|emb\|CAG83602.1\| YALI0A0...	63.0	[0..2]	[139..4]
gi\|46135823, gi\|... - gi\|46135823\|ref\|XP_389603.1\| hypothetical protein FG09427.1 [Gibberella zeae PH-1], gi\|42554576\|gb\|E...	60.0	[0..5]	[128..11]

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Predicted Domain #1

Region A:
Residues: [1-140]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MALKKNTHNK STKRVTKHPS LKTLTHKQIH TTIFVKSTTP YVSALKRINK FLDSVHKQGS  60
   61 SYVAVLGMGK AVEKTLALGC HFQDQKNKKI EVYTKTIEVL DEVITEGQAD IDMESDVEDD 120
  121 DKETQLKKRA VSGVELRIYV

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	2.56
Match:	2h9uA
Description:	No description for 2h9uA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits