YRC Public Data Repository - Protein Structure Prediction

Protein:	IFA38
Organism:	Saccharomyces cerevisiae
Length:	347 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for IFA38.

Description	E-value	Query Range	Subject Range
gi\|18310052, gi\|... - gi\|18310052\|ref\|NP_561986.1\| 3-ketoacyl-(acyl-carrier-protein) reductase [Clostridium perfringens st...	6.0E-88	[60..322]	[2..246]
FABG_THEMA - 3-oxoacyl-[acyl-carrier-protein] reductase FabG OS=Thermotoga maritima GN=fabG PE=3 SV=1 FABG_THEMA - 3-oxoacyl-[acyl-carrier-protein] reductase FabG OS=Thermotoga maritima (strain ATCC 43589 / MSB8 / D...	7.0E-88	[59..321]	[2..245]
gi\|25283158 - pir\|\|C83961 3-oxoacyl-(acyl-carrier protein) reductase fabG [imported] - Bacillus halodurans (strain... gi\|10175111, gi\|... - gi\|15615054\|ref\|NP_243357.1\| 3-oxoacyl-(acyl-carrier protein) reductase [Bacillus halodurans C-125],...	3.0E-86	[60..322]	[2..246]
gi\|15080872 - gi\|15080872\|gb\|AAK83686.1\|AF237573_1 3-oxoacyl-acyl-carrier protein reductase precursor [Plasmodium ...	5.0E-86	[20..320]	[3..299]
gi\|16800987 - gi\|16800987\|ref\|NP_471255.1\| hypothetical protein lin1921 [Listeria innocua Clip11262] gi\|25283285, gi\|... - pir\|\|AG1672 3-ketoacyl-acyl carrier protein reductase homolog fabG [imported] - Listeria innocua (st...	2.0E-84	[60..322]	[3..247]
gi\|16803847 - gi\|16803847\|ref\|NP_465332.1\| hypothetical protein lmo1807 [Listeria monocytogenes EGD-e] gi\|25283283, gi\|... - pir\|\|AG1300 3-ketoacyl-acyl carrier protein reductase homolog fabG [imported] - Listeria monocytogen... gi\|224501391 - gi\|224501391\|ref\|ZP_03669698.1\| hypothetical protein LmonFR_02530 [Listeria monocytogenes FSL R2-561... gi\|254831591, gi... - gi\|254831591\|ref\|ZP_05236246.1\| hypothetical protein Lmon1_09568 [Listeria monocytogenes 10403S], gi...	3.0E-84	[60..322]	[3..247]
gi\|1502421 - gi\|1502421\|gb\|AAC44307.1\| 3-ketoacyl-acyl carrier protein reductase gi\|1502421\|gb\|AA... - 3-ketoacyl-acyl carrier protein reductase	3.0E-84	[60..322]	[2..246]
gi\|221313791 - gi\|221313791\|ref\|ZP_03595596.1\| beta-ketoacyl-acyl carrier protein reductase [Bacillus subtilis subs... gi\|221318715 - gi\|221318715\|ref\|ZP_03600009.1\| beta-ketoacyl-acyl carrier protein reductase [Bacillus subtilis subs... gi\|221322986 - gi\|221322986\|ref\|ZP_03604280.1\| beta-ketoacyl-acyl carrier protein reductase [Bacillus subtilis subs... FABG_BACSU - 3-oxoacyl-[acyl-carrier-protein] reductase FabG OS=Bacillus subtilis GN=fabG PE=3 SV=3 FABG_BACSU - 3-oxoacyl-[acyl-carrier-protein] reductase FabG OS=Bacillus subtilis (strain 168) GN=fabG PE=3 SV=3	5.0E-84	[60..322]	[2..246]
FABG_AQUAE - 3-oxoacyl-[acyl-carrier-protein] reductase FabG OS=Aquifex aeolicus (strain VF5) GN=fabG PE=1 SV=1 FABG_AQUAE - 3-oxoacyl-[acyl-carrier-protein] reductase FabG OS=Aquifex aeolicus GN=fabG PE=1 SV=1	9.0E-83	[59..320]	[4..247]
TRNH5_ARATH - Tropinone reductase homolog At2g29260, chloroplastic OS=Arabidopsis thaliana GN=At2g29260 PE=2 SV=1	8.0E-82	[41..329]	[49..321]

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Predicted Domain #1

Region A:
Residues: [1-347]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTFMQQLQEA GERFRCINGL LWVVFGLGVL KCTTLSLRFL ALIFDLFLLP AVNFDKYGAK  60
   61 TGKYCAITGA SDGIGKEFAR QMAKRGFNLV LISRTQSKLE ALQKELEDQH HVVVKILAID 120
  121 IAEDKESNYE SIKELCAQLP ITVLVNNVGQ SHSIPVPFLE TEEKELRNII TINNTATLLI 180
  181 TQIIAPKIVE TVKAENKKSG TRGLILTMGS FGGLIPTPLL ATYSGSKSFL QGWSNSLAGE 240
  241 LSKDAIDVEL IISYLVTSSM SKIRRSSLMI PNPQQFVKST LRSVGRRCGS QERYATMTPY 300
  301 WAHAVYQFVI TETFGVYSKI VNSINYSFHK SIRIRALKKA ARQVKKE

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	159.67837
Match:	1i01A_
Description:	beta-keto acyl carrier protein reductase
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits