| Protein: | YSW1 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 609 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YSW1.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [1..609] | [1..609] |
|
|
0.001 | [202..506] | [314..633] |
|
Region A: Residues: [1-281] |
1 11 21 31 41 51
| | | | | |
1 MSSLADTVEG SEAKRGRFSN NALTSDTGIL QKNSTLRNWF LKPTADLKNS CEDRVEDDVN 60
61 DVYLNDKNSQ KSVEERKLGR KVRSFFKQTN SNKDESVLED EDDALVWKKT SNKCAKKENS 120
121 HDIQKGSFTK KIRNSIFKSA NDVKEFRNEN NLLLPVELSS DDENESHFTD ANSHVMQSKS 180
181 PEKIPSKDQC LTKGAKNKGL KKEYEKSFEE YSDDSDDEFS PATPPENVLE GPYKFVFQTP 240
241 NTFTSQPNIT VENDFHKGGR HVIDYLNKKL ATMNIDIDLT S
|
| Detection Method: |  |
| Confidence: | 7.7 |
| Match: | 1iu4A |
| Description: | Microbial transglutaminase |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [282-609] |
1 11 21 31 41 51
| | | | | |
1 GGKQNVSWEE ELDQLSDHVI ESITNHISKG RMHAQEKQDE LEKLKLENLN LSTLKQENLQ 60
61 HKQEINSLKD NLESISKKNN DLILEMNKLK KKSTNNKTNE YISTDENENE EITKSNMGPG 120
121 ILELNVNETS KKLQQSTFKP SKYLPRETRN NENRLKHLEK RIFGLEKSLE KKKKQVRADS 180
181 VRLDLNRYTI DQFLTLLKSL SEVLQFHNVY GNDLKENDDN IIKIETCCSA LNMKNCFEDS 240
241 SFRLQENSFK RQLGPLFANI NFSLIDQLTM NFRFYERSAN FQKETIGGLR MMLQDKDNYI 300
301 KTLMQHLKKK ESTKLIKDSK NGASTLTS
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
