| Protein: | MAK5 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 773 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for MAK5.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [1..773] | [1..773] |
|
|
0.0 | [1..616] | [42..619] |
|
|
0.0 | [1..616] | [42..619] |
|
|
0.0 | [12..615] | [22..577] |
|
|
0.0 | [12..615] | [22..577] |
|
|
0.0 | [12..615] | [22..577] |
|
Region A: Residues: [1-163] |
1 11 21 31 41 51
| | | | | |
1 MGKKRAPQKG KTVTKPQEII VDESKLNWKP VDIPDTLDDF GGFYGLEEID GVDVKVVDGK 60
61 VTFVTKKDSK VLKDSNKEKV GDDQESVENE SGSDSESELL EFKNLDDIKE GELSAASYSS 120
121 SDEDEQGNIE SSKLTDPSED VDEDVDEDVL KENVFNKDIN IDD
|
| Detection Method: |  |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [164-434] |
1 11 21 31 41 51
| | | | | |
1 ISPVNLPEWT NLAPLSMTIL QSLQNLNFLR PTEIQKKSIP VIMQGVDVMG KASTGSGKTL 60
61 AYGIPIVEKL ISNFSQKNKK PISLIFTPTR ELAHQVTDHL KKICEPVLAK SQYSILSLTG 120
121 GLSIQKQQRL LKYDNSGQIV IATPGRFLEL LEKDNTLIKR FSKVNTLILD EADRLLQDGH 180
181 FDEFEKIIKH LLVERRKNRE NSEGSSKIWQ TLIFSATFSI DLFDKLSSSR QVKDRRFKNN 240
241 EDELNAVIQH LMSKIHFNSK PVIIDTNPES K
|
| Detection Method: | |
| Confidence: | 461.228787 |
| Match: | 1hv8A_ |
| Description: | Putative DEAD box RNA helicase |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [435-597] |
1 11 21 31 41 51
| | | | | |
1 VSSQIKESLI ECPPLERDLY CYYFLTMFPG TTLIFCNAID SVKKLTVYLN NLGIPAFQIH 60
61 SSMTQKNRLK SLERFKQQSA KQKTINHSNP DSVQLSTVLI ASDVAARGLD IPGVQHVIHY 120
121 HLPRSTDIYI HRSGRTARAG SEGVSAMICS PQESMGPLRK LRK
|
| Detection Method: | |
| Confidence: | 461.228787 |
| Match: | 1hv8A_ |
| Description: | Putative DEAD box RNA helicase |
| Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [598-720] |
1 11 21 31 41 51
| | | | | |
1 TLATKNSVST DLNSRSTNRK PIKWQNTVPL LPIETDILSQ LRERSRLAGE LADHEIASNS 60
61 LRKDDNWLKK AADELGIDVD SDEDDISKSN SDTFLLKNKN KKMQKTINKD KVKAMRATLN 120
121 ELL
|
| Detection Method: | |
| Confidence: | 9.0 |
| Match: | 1d2mA_ |
| Description: | Nucleotide excision repair enzyme UvrB |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [721-773] |
1 11 21 31 41 51
| | | | | |
1 SVPIRKDRRQ KYLTGGLVNL ADNLVKKRGH NSIIGHEKTN ALETLKKKKK RNN
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.485 | a.4.1 | Homeodomain-like |
| View | Download | 0.445 | a.144.1 | PABC (PABP) domain |
| View | Download | 0.262 | a.64.1 | Saposin |
| View | Download | 0.325 | a.140.3 | Rho termination factor, N-terminal domain |
| View | Download | 0.358 | a.4.1 | Homeodomain-like |
| View | Download | 0.238 | a.4.1 | Homeodomain-like |
| View | Download | 0.219 | a.4.10 | N-terminal Zn binding domain of HIV integrase |
| View | Download | 0.215 | a.8.1 | Bacterial immunoglobulin/albumin-binding domains |
| View | Download | 0.207 | a.4.1 | Homeodomain-like |
