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View Structure Prediction Details

Protein: IRA1
Organism: Saccharomyces cerevisiae
Length: 3092 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



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Top Sequence Alignment Hits

No multiple sequence alignment data found for IRA1.

Predicted Domain #1
Region A:
Residues: [1-401]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNQSDPQDKK NFPMEYSLTK HLFFDRLLLV LPIESNLKTY ADVEADSVFN SCRSIILNIA  60
   61 ITKDLNPIIE NTLGLIDLIV QDEEITSDNI TDDIAHSILV LLRLLSDVFE YYWDQNNDFK 120
  121 KIRNDNYKPG FSSHRPNFHT SRPKHTRINP ALATMLLCKI SKLKFNTRTL KVLQNMSHHL 180
  181 SGSATISKSS ILPDSQEFLQ KRNYPAYTEK IDLTIDYIQR FISASNHVEF TKCVKTKVVA 240
  241 PLLISHTSTE LGVVNHLDLF GCEYLTDKNL LAYLDILQHL SSYMKRTIFH SLLLYYASKA 300
  301 FLFWIMARPK EYVKIYNNLI SSDYNSPSSS SDNGGSNNSD KTSISQLVSL LFDDVYSTFS 360
  361 VSSLLTNVNN DHHYHLHHSS SSSKTTNTNS PNSISKTSIK Q

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [402-1193]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SSVNASGNVS PSQFSTGNDA SPTSPMASLS SPLNTNILGY PLSPITSTLG QANTSTSTTA  60
   61 ATTKTDADTP STMNTNNNNN NNNSANLNNI PQRIFSLDDI SSFNSSRKSL NLDDSNSLFL 120
  121 WDTSQHSNAS MTNTNMHAGV NNSQSQNDQS SLNYMENIME LYSNYTGSEL SSHTAILRFL 180
  181 VVLTLLDSEV YDEMNSNSYR KISEPIMNIN PKDSNTSSWG SASKNPSIRH LTHGLKKLTL 240
  241 QQGRKRNVKF LTYLIRNLNG GQFVSDVSLI DSIRSILFLM TMTSSISQID SNIASVIFSK 300
  301 RFYNLLGQNL EVGTNWNSAT ANTFISHCVE RNPLTHRRLQ LEFFASGLQL DSDLFLRHLQ 360
  361 LEKELNHIDL PKISLYTEGF RVFFHLVSTK KLHEDIAEKT SSVLKRLFCI IADILLKATP 420
  421 YFDDNVTKII ASILDGHILD QFDAARTLSN DDHVSFDAAT SVYTEPTEII HNSSDASLVS 480
  481 SLSQSPLSIN SGSNITNTRT WDIQSILPTL SNRSSASDLS LSNILTNPLE AQQNNNANLL 540
  541 AHRLSGVPTT KRYASPNDSE RSRQSPYSSP PQLQQSDLPS PLSVLSSSAG FSSNHSITAT 600
  601 PTILKNIKSP KPNKTKKIAD DKQLKQPSYS RVILSDNDEA RKIMMNIFSI FKRMTNWFIR 660
  661 PDANTEFPKT FTDIIKPLFV SILDSNQRLQ VTARAFIEIP LSYIATFEDI DNDLDPRVLN 720
  721 DHYLLCTYAV TLFASSLFDL KLENAKREML LDIIVKFQRV RSYLSNLAEK HNLVQAIITT 780
  781 ERLTLPLLVG AV

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [1194-1571]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GSGIFISLYC SRGNTPRLIK ISCCEFLRSL RFYQKYVGAL DQYSIYNIDF IDAMAQDNFT  60
   61 ASGSVALQRR LRNNILTYIK GSDSILLDSM DVIYKKWFYF SCSKSVTQEE LVDFRSLAGI 120
  121 LASMSGILSD MQELEKSKSA PDNEGDSLSF ESRNPAYEVH KSLKLELTKK MNFFISKQCQ 180
  181 WLNNPNLLTR ENSRDILSIE LHPLSFNLLF NNLGLKIDEL MSIDLSKSHE DSSFVLLEQI 240
  241 IIIIRTILKR DDDEKIMLLF STDLLDAVDK LIEIVEKISI KSSKYYKGII QMSKMFRAFE 300
  301 HSEKNLGISN HFHLKNKWLK LVIGWFKLSI NKDYDFENLS RPLREMDLQK RDEDFLYIDT 360
  361 SIESAKALAY LTHNVPLE

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #4
Region A:
Residues: [1572-1669]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 IPPSSSKEDW NRSSTVSFGN HFTILLKGLE KSADLNQFPV SLRHKISILN ENVIIALTNL  60
   61 SNANVNVSLK FTLPMGYSPN KDIRIAFLRV FIDIVTNY

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

    MCM
Score
SCOP
Match
SCOP Description
View Download 0.829 c.55.4 Translational machinery components

Predicted Domain #5
Region A:
Residues: [1670-1727]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PVNPEKHEMD KMLAIDDFLK YIIKNPILAF FGSLACSPAD VDLYAGGFLN AFDTRNAS

[Run NCBI BLAST on this sequence.]

Region B:
Residues: [1944-2017]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 EDPTPISFDY SFLHKFFYLN EFTIRKEIIN ESKLPGEFSF LKNTVMLNDK ILGVLGQPSM  60
   61 EIKNEIPPFV VENR

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 280.68867
Match: 1nf1A
Description: GAP related domain of neurofibromin
Matching Structure (courtesy of the PDB):

Predicted Domain #6
Region A:
Residues: [1728-1943]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 HILVTELLKQ EIKRAARSDD ILRRNSCATR ALSLYTRSRG NKYLIKTLRP VLQGIVDNKE  60
   61 SFEIDKMKPG SENSEKMLDL FEKYMTRLID AITSSIDDFP IELVDICKTI YNAASVNFPE 120
  121 YAYIAVGSFV FLRFIGPALV SPDSENIIIV THAHDRKPFI TLAKVIQSLA NGRENIFKKD 180
  181 ILVSKEEFLK TCSDKIFNFL SELCKIPTNN FTVNVR

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 280.68867
Match: 1nf1A
Description: GAP related domain of neurofibromin
Matching Structure (courtesy of the PDB):

Predicted Domain #7
Region A:
Residues: [2018-2742]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 EKYPSLYEFM SRYAFKKVDM KEEEEDNAPF VHEAMTLDGI QIIVVTFTNC EYNNFVMDSL  60
   61 VYKVLQIYAR MWCSKHYVVI DCTTFYGGKA NFQKLTTLFF SLIPEQASSN CMGCYYFNVN 120
  121 KSFMDQWASS YTVENPYLVT TIPRCFINSN TDQSLIKSLG LSGRSLEVLK DVRVTLHDIT 180
  181 LYDKEKKKFC PVSLKIGNKY FQVLHEIPQL YKVTVSNRTF SIKFNNVYKI SNLISVDVSN 240
  241 TTGVSSEFTL SLDNEEKLVF CSPKYLEIVK MFYYAQLKME EDFGTDFSND ISFSTSSSAV 300
  301 NASYCNVKEV GEIISHLSLV ILVGLFNEDD LVKNISYNLL VATQEAFNLD FGTRLHKSPE 360
  361 TYVPDDTTTF LALIFKAFSE SSTELTPYIW KYMLDGLEND VIPQEHIPTV VCSLSYWVPN 420
  421 LYEHVYLAND EEGPEAISRI IYSLIRLTVK EPNFTTAYLQ QIWFLLALDG RLTNVIVEEI 480
  481 VSHALDRDSE NRDWMKAVSI LTSFPTTEIA CQVIEKLINM IKSFLPSLAV EASAHSWSEL 540
  541 TILSKISVSI FFESPLLSQM YLPEILFAVS LLIDVGPSEI RVSLYELLMN VCHSLTNNES 600
  601 LPERNRKNLD IVCATFARQK LNFISGFSQE KGRVLPNFAA SSFSSKFGTL DLFTKNIMLL 660
  661 MEYGSISEGA QWEAKYKKYL MDAIFGHRSF FSARAMMILG IMSKSHTSLF LCKELLVETM 720
  721 KVFAE

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #8
Region A:
Residues: [2743-3092]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PVVDDEQMFI IIAHVFTYSK IVEGLDPSSE LMKELFWLAT ICVESPHPLL FEGGLLFMVN  60
   61 CLKRLYTVHL QLGFDGKSLA KKLMESRNFA ATLLAKLESY NGCIWNEDNF PHIILGFIAN 120
  121 GLSIPVVKGA ALDCLQALFK NTYYERKSNP KSSDYLCYLF LLHLVLSPEQ LSTLLLEVGF 180
  181 EDELVPLNNT LKVPLTLINW LSSDSDKSNI VLYQGALLFS CVMSDEPCKF RFALLMRYLL 240
  241 KVNPICVFRF YTLTRKEFRR LSTLEQSSEA VAVSFELIGM LVTHSEFNYL EEFNDEMVEL 300
  301 LKKRGLSVVK PLDIFDQEHI EKLKGEGEHQ VAIYERKRLA TMILARMSCS 

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle