| Protein: | SHE3 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 425 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SHE3.
| Description | E-value | Query Range |
Subject Range |
|
|
5.0E-57 | [1..394] | [264..660] |
|
|
5.0E-57 | [1..394] | [1253..1649] |
|
|
2.0E-56 | [1..392] | [1247..1641] |
|
|
2.0E-56 | [5..394] | [1254..1645] |
|
|
3.0E-56 | [1..395] | [1246..1643] |
|
Region A: Residues: [1-355] |
1 11 21 31 41 51
| | | | | |
1 MSDQDNTQTS SSKLAPHHNI FMANLESSPT KDRNTSSQNA SSSRVIESLH DQIDMLTKTN 60
61 LQLTTQSQNL LSKLELAQSK ESKLLENLNL LKNENENLNS IFERKNKKLK ELEKDYSELS 120
121 NRYNEQKEKM DQLSKLAKNS SAIEQSCSEK LQNMEVNYNS LLESQNLYRD HYSDEISKLN 180
181 EKIGLLELEL SNQNLNYGSD TSSNSDIELN LNKFNDSVKD LKSLETEKDS KLSKIITHSL 240
241 DELNLQSWLN LYQTNENLIS TFAEKMDLKD VLKRNDEKIS NKGAVVQTLK KNVQTQVESN 300
301 NADALSSNNA QDMLPIKMVK LRKTPNTNDS SSNGNSSNNK RRSFYTASPL LSSGS
|
| Detection Method: |  |
| Confidence: | 23.221849 |
| Match: | 1i84S_ |
| Description: | Heavy meromyosin subfragment |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [356-425] |
1 11 21 31 41 51
| | | | | |
1 IPKSASPVLP GVKRTASVRK PSSSSSKTNV THNNDPSTSP TISVPPGVTR TVSSTHKKKG 60
61 NSMVVHGAQS
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.425 | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.395 | a.4.1 | Homeodomain-like |
| View | Download | 0.357 | a.28.3 | Retrovirus capsid protein C-terminal domain |
| View | Download | 0.505 | a.179.1 | Replisome organizer (g39p helicase loader/inhibitor protein) |
| View | Download | 0.505 | a.179.1 | Replisome organizer (g39p helicase loader/inhibitor protein) |
| View | Download | 0.425 | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.395 | a.4.1 | Homeodomain-like |
| View | Download | 0.357 | a.28.3 | Retrovirus capsid protein C-terminal domain |
| View | Download | 0.330 | d.50.3 | PI-Pfui intein middle domain |
| View | Download | 0.330 | d.50.3 | PI-Pfui intein middle domain |
| View | Download | 0.317 | a.60.3 | C-terminal domain of RNA polymerase alpha subunit |
| View | Download | 0.317 | d.58.25 | Killer toxin KP6 alpha-subunit |
| View | Download | 0.308 | d.58.3 | Protease propeptides/inhibitors |
| View | Download | 0.294 | a.60.6 | DNA polymerase beta, N-terminal domain-like |
| View | Download | 0.294 | a.60.2 | RuvA domain 2-like |
| View | Download | 0.289 | a.35.1 | lambda repressor-like DNA-binding domains |
| View | Download | 0.283 | d.68.3 | SirA-like |
| View | Download | 0.260 | c.30.1 | PreATP-grasp domain |
| View | Download | 0.224 | c.102.1 | Cell-division inhibitor MinC, N-terminal domain |
| View | Download | 0.215 | d.58.3 | Protease propeptides/inhibitors |
