YRC Public Data Repository - Protein Structure Prediction

Protein:	CBP6
Organism:	Saccharomyces cerevisiae
Length:	162 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CBP6.

Description	E-value	Query Range	Subject Range
gi\|45270256 - gi\|45270256\|gb\|AAS56509.1\| YBR120C [Saccharomyces cerevisiae]	319.0	[0..1]	[162..1]
gi\|44982239, gi\|... - gi\|45187501\|ref\|NP_983724.1\| ADL372Wp [Ashbya gossypii ATCC 10895], gi\|44982239\|gb\|AAS51548.1\| ADL37... gi\|44982239 - gi\|44982239\|gb\|AAS51548.1\| ADL372Wp [Ashbya gossypii ATCC 10895]	188.0	[0..3]	[162..2]
gi\|49524769 - gi\|49524769\|emb\|CAG58375.1\| unnamed protein product [Candida glabrata] gi\|49524769, gi\|... - gi\|50286071\|ref\|XP_445464.1\| unnamed protein product [Candida glabrata], gi\|49524769\|emb\|CAG58375.1\|...	188.0	[0..1]	[162..1]
gi\|49641059 - gi\|49641059\|emb\|CAH02320.1\| KLLA0B08954p [Kluyveromyces lactis] gi\|49641059, gi\|... - gi\|50303955\|ref\|XP_451927.1\| unnamed protein product [Kluyveromyces lactis], gi\|49641059\|emb\|CAH0232...	182.0	[0..4]	[162..2]
orf19.9747, orf1... - orf19.2201 CGDID:CAL0006166 Assembly 19, Contig19-10141 (79147, 78809) CDS, reverse complemented, tr... gi\|238883669 - gi\|238883669\|gb\|EEQ47307.1\| conserved hypothetical protein [Candida albicans WO-1] gi\|68480120, gi\|... - gi\|68480120\|ref\|XP_715983.1\| hypothetical protein CaO19.9747 [Candida albicans SC5314], gi\|68479987\|...	87.0	[0..1]	[162..1]
gi\|49653779, gi\|... - gi\|50419181\|ref\|XP_458113.1\| hypothetical protein DEHA0C10868g [Debaryomyces hansenii CBS767], gi\|49...	86.0	[0..3]	[162..2]

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Predicted Domain #1

Region A:
Residues: [1-162]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSSQVVRDS AKKLVNLLEK YPKDRIHHLV SFRDVQIARF RRVAGLPNVD DKGKSIKEKK  60
   61 PSLDEIKSII NRTSGPLGLN KEMLTKIQNK MVDEKFTEES INEQIRALST IMNNKFRNYY 120
  121 DIGDKLYKPA GNPQYYQRLI NAVDGKKKES LFTAMRTVLF GK

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits