| Protein: | CYC8 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 966 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CYC8.
| Description | E-value | Query Range |
Subject Range |
|
|
461.0 | [0..41] | [966..41] |
|
|
424.0 | [0..3] | [545..52] |
|
|
423.0 | [0..5] | [547..977] |
|
|
417.0 | [0..1] | [559..458] |
|
|
415.0 | [0..2] | [556..90] |
|
|
409.0 | [0..4] | [551..63] |
|
|
408.0 | [0..4] | [551..63] |
|
Region A: Residues: [1-94] |
1 11 21 31 41 51
| | | | | |
1 MNPGGEQTIM EQPAQQQQQQ QQQQQQQQQQ AAVPQQPLDP LTQSTAETWL SIASLAETLG 60
61 DGDRAAMAYD ATLQFNPSSA KALTSLAHLY RSRD
|
| Detection Method: |  |
| Confidence: | 31.69897 |
| Match: | 1fchA |
| Description: | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [95-164] |
1 11 21 31 41 51
| | | | | |
1 MFQRAAELYE RALLVNPELS DVWATLGHCY LMLDDLQRAY NAYQQALYHL SNPNVPKLWH 60
61 GIGILYDRYG
|
| Detection Method: | |
| Confidence: | 31.69897 |
| Match: | 1fchA |
| Description: | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) |
| Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [165-274] |
1 11 21 31 41 51
| | | | | |
1 SLDYAEEAFA KVLELDPHFE KANEIYFRLG IIYKHQGKWS QALECFRYIL PQPPAPLQEW 60
61 DIWFQLGSVL ESMGEWQGAK EAYEHVLAQN QHHAKVLQQL GCLYGMSNVQ
|
| Detection Method: | |
| Confidence: | 31.69897 |
| Match: | 1fchA |
| Description: | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) |
| Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [275-443] |
1 11 21 31 41 51
| | | | | |
1 FYDPQKALDY LLKSLEADPS DATTWYHLGR VHMIRTDYTA AYDAFQQAVN RDSRNPIFWC 60
61 SIGVLYYQIS QYRDALDAYT RAIRLNPYIS EVWYDLGTLY ETCNNQLSDA LDAYKQAARL 120
121 DVNNVHIRER LEALTKQLEN PGNINKSNGA PTNASPAPPP VILQPTLQP
|
| Detection Method: | |
| Confidence: | 6.522879 |
| Match: | 1ft2A |
| Description: | Protein farnesyltransferase alpha-subunit |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [444-509] |
1 11 21 31 41 51
| | | | | |
1 NDQGNPLNTR ISAQSANATA SMVQQQHPAQ QTPINSSATM YSNGASPQLQ AQAQAQAQAQ 60
61 AQAQAQ
|
| Detection Method: | |
| Confidence: | 6.522879 |
| Match: | 1ft2A |
| Description: | Protein farnesyltransferase alpha-subunit |
| Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [510-588] |
1 11 21 31 41 51
| | | | | |
1 AQAQAQAQAQ AQAQAQAQAQ AQAQAQAHAQ AQAQAQAQAQ AQAQAQAQQQ QQQQQQQQQQ 60
61 QQQQQQQQQQ QQQQQQQQL
|
| Detection Method: | |
| Confidence: | 14.11 |
| Match: | |
| Description: | No description for 1m2vB was found. |
|
Region A: Residues: [589-834] |
1 11 21 31 41 51
| | | | | |
1 QPLPRQQLQQ KGVSVQMLNP QQGQPYITQP TVIQAHQLQP FSTQAMEHPQ SSQLPPQQQQ 60
61 LQSVQHPQQL QGQPQAQAPQ PLIQHNVEQN VLPQKRYMEG AIHTLVDAAV SSSTHTENNT 120
121 KSPRQPTHAI PTQAPATGIT NAEPQVKKQK LNSPNSNINK LVNTATSIEE NAKSEVSNQS 180
181 PAVVESNTNN TSQEEKPVKA NSIPSVIGAQ EPPQEASPAE EATKAASVSP STKPLNTEPE 240
241 SSSVQP
|
| Detection Method: | |
| Confidence: | 10.21 |
| Match: | |
| Description: | No description for 1jv2B was found. |
|
Region A: Residues: [835-892] |
1 11 21 31 41 51
| | | | | |
1 TVSSESSTTK ANDQSTAETI ELSTATVPAE ASPVEDEVRQ HSKEENGTTE ASAPSTEE
|
| Detection Method: | |
| Confidence: | 10.21 |
| Match: | |
| Description: | No description for 1jv2B was found. |
|
Region A: Residues: [893-966] |
1 11 21 31 41 51
| | | | | |
1 AEPAASRDAE KQQDETAATT ITVIKPTLET METVKEEAKM REEEQTSQEK SPQENTLPRE 60
61 NVVRQVEEDE NYDD
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
