YRC Public Data Repository - Protein Structure Prediction

Protein:	YBR096W
Organism:	Saccharomyces cerevisiae
Length:	230 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YBR096W.

Description	E-value	Query Range	Subject Range
gi\|190408743 - gi\|190408743\|gb\|EDV12008.1\| conserved hypothetical protein [Saccharomyces cerevisiae RM11-1a] YBR096W - Putative protein of unknown function; green fluorescent protein (GFP)-fusion protein localizes to th... YBU6_YEAST - Uncharacterized protein YBR096W OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YBR096W ... gi\|207347701 - gi\|207347701\|gb\|EDZ73790.1\| YBR096Wp-like protein [Saccharomyces cerevisiae AWRI1631] gi\|151946490 - gi\|151946490\|gb\|EDN64712.1\| conserved protein [Saccharomyces cerevisiae YJM789]	0.0	[1..230]	[1..230]
gi\|70995666, gi\|... - gi\|70995666\|ref\|XP_752588.1\| conserved hypothetical protein [Aspergillus fumigatus Af293], gi\|668502... gi\|19309401, gi\|... - gi\|41581298\|emb\|CAE47947.1\| hypothetical protein, conserved [Aspergillus fumigatus], gi\|19309401\|emb...	5.0E-60	[56..190]	[62..203]
gi\|220958524 - gi\|220958524\|gb\|ACL91805.1\| CG4660-PA [synthetic construct] CG4660-PA - This gene is referred to in FlyBase by the symbol Dmel\CG4660 (CG4660, FBgn0029839). It is a protein...	0.002	[80..155]	[66..140]
gi\|17512251 - gi\|17512251\|gb\|AAH19104.1\| C8orf55 protein [Homo sapiens]	0.009	[70..166]	[53..148]

Back

Predicted Domain #1

Region A:
Residues: [1-230]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGVCTIFRWL FAAYLLSSYK SLPGAYFVRF YYYVIQNLFL PMFTGFETEN IKKLEKNEYG  60
   61 CFSYTSLDTY ASPFECDFYF HKSNSTYFAE LDISRGNLMC KIFQKLMLNS KHYPYIPVAN 120
  121 VFTNFLKEIK PFQKYSVSSR IICWDEKWIY VMSRFTIKKG TVLCSLSLTK YVLKDGRKTI 180
  181 KPKDALEYCG LYNEKVAKIS EDNLKLLTER CGFHETVPLE NLSQEYCSEI

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits