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View Structure Prediction Details

Protein: YBR085C-A
Organism: Saccharomyces cerevisiae
Length: 85 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YBR085C-A.

Description E-value Query
Range
Subject
Range
gi|50304261, gi|... - gi|50304261|ref|XP_452080.1| unnamed protein product [Kluyveromyces lactis], gi|49641212|emb|CAH0247...
gi|49641212 - gi|49641212|emb|CAH02473.1| KLLA0B12353p [Kluyveromyces lactis]
101.0 [0..4] [84..2]
gi|49528360 - gi|49528360|emb|CAG62017.1| unnamed protein product [Candida glabrata]
gi|49528360, gi|... - gi|50293271|ref|XP_449047.1| unnamed protein product [Candida glabrata], gi|49528360|emb|CAG62017.1|...
82.0 [0..5] [79..1]
gi|45187576, gi|... - gi|45187576|ref|NP_983799.1| ADL297Wp [Ashbya gossypii ATCC 10895], gi|44982314|gb|AAS51623.1| ADL29...
gi|44982314 - gi|44982314|gb|AAS51623.1| ADL297Wp [Ashbya gossypii ATCC 10895]
76.0 [0..19] [83..25]

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Predicted Domain #1
Region A:
Residues: [1-85]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSALYKQST NFTHSTGSFL QSAPVELTTV SGYQEFLKKQ EKKNYEIQTV LSEDKSHGYV  60
   61 LKDGEVIANI IGEAKDYLLD LAGQA

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

    MCM
Score
SCOP
Match
SCOP Description
View Download 0.771 a.77.1 DEATH domain
View Download 0.771 a.77.1 DEATH domain
View Download 0.656 a.7.14 Description not found.
View Download 0.590 a.25.5 Description not found.
View Download 0.570 a.77.1 DEATH domain
View Download 0.570 a.77.1 DEATH domain
View Download 0.519 a.4.1 Homeodomain-like
View Download 0.519 a.4.1 Homeodomain-like
View Download 0.467 c.47.1 Thioredoxin-like
View Download 0.457 a.7.8 GAT domain
View Download 0.441 d.88.1 SRF-like
View Download 0.441 d.88.1 SRF-like
View Download 0.377 a.4.1 Homeodomain-like
View Download 0.347 d.88.1 SRF-like
View Download 0.335 d.88.1 SRF-like


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle