YRC Public Data Repository - Protein Structure Prediction

Protein:	TIP1
Organism:	Saccharomyces cerevisiae
Length:	210 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for TIP1.

Description	E-value	Query Range	Subject Range
PAU22_YEAST, PAU... - Seripauperin-22 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=PAU22 PE=3 SV=1, Seripau... PAU21, PAU22 - Protein of unknown function, member of the seripauperin multigene family encoded mainly in subtelome... gi\|190407682 - gi\|190407682\|gb\|EDV10949.1\| protein PAU3 [Saccharomyces cerevisiae RM11-1a]	1.0E-35	[5..109]	[55..154]
gi\|7507776 - gi\|7507776\|pir\|\|T16867 probable cytochrome P450 T13C5.1 [similarity] - Caenorhabditis elegans	1.0E-32	[5..109]	[12..111]

Back

Predicted Domain #1

Region A:
Residues: [1-210]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSVSKIAFVL SAIASLAVAD TSAAETAELQ AIIGDINSHL SDYLGLETGN SGFQIPSDVL  60
   61 SVYQQVMTYT DDAYTTLFSE LDFDAITKTI VKLPWYTTRL SSEIAAALAS VSPASSEAAS 120
  121 SSEAASSSKA ASSSEATSSA APSSSAAPSS SAAPSSSAES SSKAVSSSVA PTTSSVSTST 180
  181 VETASNAGQR VNAGAASFGA VVAGAAALLL

[Run NCBI BLAST on this sequence.]

Detection Method:	ORFEUS
Confidence:	11.69
Match:	1ldvA
Description:	No description for 1ldvA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits