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View Structure Prediction Details

Protein: YBR053C
Organism: Saccharomyces cerevisiae
Length: 358 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YBR053C.

Description E-value Query
Range		 Subject
Range
YBR053C - Putative protein of unknown function; induced by cell wall perturbation
YBQ3_YEAST - Uncharacterized protein YBR053C OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YBR053C ...
 2.0E-84 [1..358] [1..358]
RGN - regucalcin (senescence marker protein-30)
 4.0E-64 [22..350] [12..295]
RGN_RABIT - Regucalcin OS=Oryctolagus cuniculus GN=RGN PE=2 SV=1
 3.0E-63 [22..350] [12..295]
RGN_BOVIN - Regucalcin OS=Bos taurus GN=RGN PE=2 SV=1
 6.0E-63 [22..350] [12..295]
RGN_RAT - Regucalcin OS=Rattus norvegicus GN=Rgn PE=1 SV=3
 2.0E-62 [25..350] [15..295]
RGN_MOUSE - Regucalcin OS=Mus musculus GN=Rgn PE=1 SV=1
 3.0E-62 [25..350] [15..295]
RGN_XENLA - Regucalcin OS=Xenopus laevis GN=rgn PE=2 SV=1
 7.0E-62 [27..352] [17..297]
RGN_CHICK - Regucalcin OS=Gallus gallus GN=RGN PE=2 SV=1
 4.0E-60 [25..352] [15..297]

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Predicted Domain #1
Region A:
Residues: [1-358] 
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSVGDFEEI ILHDLKPYYH VPGAIHSEGI TFVKETGTLL WVDIFKGEVH KVEDIEQPES  60
   61 SHSFFSISRA NYGKNASIEY PPNPDELKES VGCIFPILDG ASQNEIKQVL FGSKFGIGKL 120
  121 DFSKSEWEYV ILYSECPELS TDRAYKLRSN DGNVSPDGKY IYVGLMSDFP FDLEPIGCLL 180
  181 RVDLLAHKIE LVWNCLLIPN AIHWDESDQK TMYVTDSLNF TIWKCPGGDL LKRDELIDVK 240
  241 NSNNQSFESP EPDGSAIWFS KDGKHSGFLF ITVWSTSKVQ MFDLTNGKLL KEFILPEQTP 300
  301 RVSCCCFVGK DLFVTTANAE INDAVRTNTD KNGGCIYKIP NVLDGNVPLE STKRQPLH

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 29.221849
Match: 1e1aA_
Description: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
binding 0.219662916329788 bayes_pls_golite062009
YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle