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View Structure Prediction Details

Protein: FMP23
Organism: Saccharomyces cerevisiae
Length: 175 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for FMP23.

Description E-value Query
Range
Subject
Range
gi|50289597, gi|... - gi|50289597|ref|XP_447230.1| unnamed protein product [Candida glabrata], gi|49526539|emb|CAG60163.1|...
gi|49526539 - gi|49526539|emb|CAG60163.1| unnamed protein product [Candida glabrata]
166.0 [0..23] [173..29]
gi|50303047, gi|... - gi|50303047|ref|XP_451461.1| unnamed protein product [Kluyveromyces lactis], gi|49640592|emb|CAH0304...
gi|49640592 - gi|49640592|emb|CAH03049.1| KLLA0A10527p [Kluyveromyces lactis]
147.0 [0..13] [174..6]

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Predicted Domain #1
Region A:
Residues: [1-175]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLINHLSKIR TVRHFSNIKP VLSKEVSRRV IVAPASHFKT SSPNVKSNIP IHEYKQLPED  60
   61 SNYIEKHYKE LQVFLNEFLI KKLNKTYADF EGDPDELVFQ LEKFIELEVT PRYTNHSAPD 120
  121 GCEERFKSIG DRIVVDRYLD FVKDVRLTLL LNGGHSFIFD VMLQAKEVFD KMQKE

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

    MCM
Score
SCOP
Match
SCOP Description
View Download 0.604 f.1.3 delta-Endotoxin (insectocide), N-terminal domain
View Download 0.596 a.29.6 Description not found.
View Download 0.498 a.24.9 alpha-catenin/vinculin
View Download 0.491 f.1.3 delta-Endotoxin (insectocide), N-terminal domain
View Download 0.436 a.118.9 ENTH/VHS domain
View Download 0.436 a.118.9 ENTH/VHS domain
View Download 0.399 a.24.9 alpha-catenin/vinculin
View Download 0.397 a.91.1 Regulator of G-protein signalling, RGS
View Download 0.368 f.1.3 delta-Endotoxin (insectocide), N-terminal domain


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle