| Protein: | CDS1 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 457 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CDS1.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [1..457] | [1..457] |
|
|
0.0 | [6..436] | [12..439] |
|
|
0.0 | [6..436] | [12..438] |
|
|
0.0 | [20..436] | [3..416] |
|
|
0.0 | [10..434] | [37..456] |
|
|
0.0 | [6..434] | [33..465] |
|
|
0.0 | [7..430] | [25..444] |
|
Region A: Residues: [1-179] |
1 11 21 31 41 51
| | | | | |
1 MSDNPEMKPH GTSKEIVESV TDATSKAIDK LQEELHKDAS ESVTPVTKES TAATKESRKY 60
61 NFFIRTVWTF VMISGFFITL ASGHAWCIVL ILGCQIATFK ECIAVTSASG REKNLPLTKT 120
121 LNWYLLFTTI YYLDGKSLFK FFQATFYEYP VLNFIVTNHK FICYCLYLMG FVLFVCSLR
|
| Detection Method: |  |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.436 | a.47.1 | STAT |
| View | Download | 0.530 | f.35.1 | Multidrug efflux transporter AcrB transmembrane domain |
| View | Download | 0.530 | f.35.1 | Multidrug efflux transporter AcrB transmembrane domain |
| View | Download | 0.494 | f.35.1 | Multidrug efflux transporter AcrB transmembrane domain |
| View | Download | 0.484 | f.35.1 | Multidrug efflux transporter AcrB transmembrane domain |
| View | Download | 0.484 | f.35.1 | Multidrug efflux transporter AcrB transmembrane domain |
| View | Download | 0.472 | f.1.3 | delta-Endotoxin (insectocide), N-terminal domain |
| View | Download | 0.472 | f.1.3 | delta-Endotoxin (insectocide), N-terminal domain |
| View | Download | 0.436 | a.47.1 | STAT |
| View | Download | 0.427 | a.24.9 | alpha-catenin/vinculin |
| View | Download | 0.413 | a.24.1 | Apolipoprotein |
| View | Download | 0.404 | a.24.9 | alpha-catenin/vinculin |
| View | Download | 0.338 | a.25.1 | Ferritin-like |
| View | Download | 0.329 | a.47.2 | t-snare proteins |
| View | Download | 0.309 | a.24.9 | alpha-catenin/vinculin |
| View | Download | 0.306 | f.25.1 | Cytochrome c oxidase subunit III-like |
| View | Download | 0.301 | a.7.8 | GAT domain |
| View | Download | 0.298 | f.1.2 | Diphtheria toxin, middle domain |
| View | Download | 0.282 | f.13.1 | Family A G protein-coupled receptor-like |
| View | Download | 0.279 | f.1.3 | delta-Endotoxin (insectocide), N-terminal domain |
| View | Download | 0.278 | a.24.14 | FAT domain of focal adhesion kinase |
| View | Download | 0.272 | a.47.1 | STAT |
| View | Download | 0.271 | f.35.1 | Multidrug efflux transporter AcrB transmembrane domain |
| View | Download | 0.270 | f.1.4 | Bcl-2 inhibitors of programmed cell death |
| View | Download | 0.265 | a.7.8 | GAT domain |
| View | Download | 0.265 | a.29.5 | alpha-ketoacid dehydrogenase kinase, N-terminal domain |
| View | Download | 0.260 | f.25.1 | Cytochrome c oxidase subunit III-like |
| View | Download | 0.252 | a.24.9 | alpha-catenin/vinculin |
| View | Download | 0.250 | f.13.1 | Family A G protein-coupled receptor-like |
| View | Download | 0.247 | a.27.1 | Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases |
| View | Download | 0.245 | a.47.1 | STAT |
| View | Download | 0.242 | f.21.1 | Transmembrane di-heme cytochromes |
| View | Download | 0.240 | a.24.14 | FAT domain of focal adhesion kinase |
| View | Download | 0.238 | a.63.1 | Apolipophorin-III |
| View | Download | 0.237 | f.31.1 | Photosystem I reaction center subunit XI, PsaL |
| View | Download | 0.234 | a.29.3 | Acyl-CoA dehydrogenase C-terminal domain-like |
| View | Download | 0.231 | b.40.4 | Nucleic acid-binding proteins |
| View | Download | 0.226 | a.24.2 | Aspartate receptor, ligand-binding domain |
| View | Download | 0.226 | a.118.8 | TPR-like |
| View | Download | 0.224 | f.21.1 | Transmembrane di-heme cytochromes |
| View | Download | 0.217 | a.24.9 | alpha-catenin/vinculin |
| View | Download | 0.217 | a.47.1 | STAT |
| View | Download | 0.214 | a.26.1 | 4-helical cytokines |
| View | Download | 0.206 | f.21.1 | Transmembrane di-heme cytochromes |
|
Region A: Residues: [180-457] |
1 11 21 31 41 51
| | | | | |
1 KGFLKFQFGS LCVTHMVLLL VVFQAHLIIK NVLNGLFWFL LPCGLVIVND IFAYLCGITF 60
61 GKTKLIEISP KKTLEGFLGA WFFTALASII LTRILSPYTY LTCPVEDLHT NFFSNLTCEL 120
121 NPVFLPQVYR LPPIFFDKVQ INSITVKPIY FHALNLATFA SLFAPFGGFF ASGLKRTFKV 180
181 KDFGHSIPGH GGITDRVDCQ FIMGSFANLY YETFISEHRI TVDTVLSTIL MNLNDKQIIE 240
241 LIDILIRFLS KKGIISAKNF EKLADIFNVT KKSLTNHS
|
| Detection Method: | |
| Confidence: | 89.0 |
| Match: | PF01148 |
| Description: | Cytidylyltransferase family |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
